Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03789 ATGGCGTCCATTGGTGCACTCAAATTCTTGCTTTACTTACTTCCATGTCTCCTCATCCATCTACCTCATTCTCAAGGTAAGCGGAATTGGAACGGTGAGTACCCATTTATCAGGAGAGGGAGTTCAATGGAGTCTTGGGACAATGGTGGTTATGACTATATAATAGTGGGAGGTGGCACTGCAGGGTGTCCATTGGCTGCAACTCTGTCTCAGAAATTCAAAGTTCTGGTGCTGGAAAGAGGAGGAGTCCCTTTCAACAACCCCAATGTGTCATTCCTGCAAAACTTTCACATAGCTTTGGCAGACACTTCACCAACTTCGGCTTCTCAGTACTTCATTTCAACCGATGGAGTCTTGAATGCAAGAGGAAGGGTTCTGGGAGGTGGCAGCTCCATTAACGCTGGCTTCTACACCCGAGCAAACCCTAGATTCATAAGAAAGGTGGGGTGGGATACACAGCTGGTGAACGAGTCTTATCCATGGGTGGAGAAGCAGGTTGTTCATCGTCCAAAGTTTTCACATTGGCAGAGAGCAGTTAGAGACGGCCTTCTAGATGCTGGTGTCTCACCCTTTAATGGATTCACCTATGATCACAAGTACGGAACCAAAGTTGGCGGAACCATTTTTGACAGATTTGGCCGCCGCCACACCGCCGCTGAATTGCTTGCTTCTGCAAATCCTCAGAAACTCACTGTCCTCGTCCATGCCACTGTCCAAAAGATTGTTTTTGACACCACAGGAACAAAACCAAAAGCCATTGGGGTTATCTTCAAGGATGAAAATGGAAAACAGCATCAGGCATTTCTGGGGAGTGGGAGACAGAGTGAAGTGATTGTGTCGAGTGGGGCAATCGGCACTCCTCAATTGCTACTTCTCAGTGGAATCGGCCCCAGAGAAGAGCTTCAGAAATTCAACATCCCTGTAGTGCTTGAAAATGAATTTGTTGGTAAAGGCATGGCCGATAACCCCATGAACACAATCTTTGTCCCTTCAAAGAGACCGGTTCAGCAGTCACTCATAGAAACTGTAGGTATAACCAATCTGGGTGTGTACATTGAGACCAGTTGTGGCTTTAGCCAGTCCAAAGACAGCATTCACTGCCACCATGGTATCTTGTCCGCAGAGATTGGGCAGCTATCCACAATCCCACCAAAGCAAAGATCACGAGAAGCTGTTGAGGCTTTTGTGAAGAGCAAGAAAGATATACCGATAGAAGCATTCAGGGGAGGGTTCATACTGTCAAAAGTTGCGAATCCTTGGTCAACAGGTGAACTGAGGTTGATAAACACTAACGTGGAGGACAACCCTGCAGTTACCTTCAACTATTTCAGCCACCCTTATGATCTCAAGCGCTGCGTGGAGGGTATTCGCTTGGCGATAAAGGTTGTGCAGTCGCAGCACGTGACAAACTACACCATGTGCGACAAAGAAAGCGCAGAGAAAATGTTGAACATCACTGTGCAGGCAAATATCAACCTCATACCCAAACATGCGAATGACACAAAGTCGCTGGAACAGTTTTGTAGAGACTCTGTGATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAAGTAGTAGACTCTGAGTATAAGGTTCTTGGTGTTGATAGACTCCGTGTGGTTGATGGCTCCACGTTTACTGAGTCGCCAGGAACCAATCCTCAAGCCACTGTGATGATGATGGGCAGGTACATGGGACTGAAGATTCTAAGGGACAGGTTGGGGAAATTGGGTGGTGTTTAA 1749 0.4717 MASIGALKFLLYLLPCLLIHLPHSQGKRNWNGEYPFIRRGSSMESWDNGGYDYIIVGGGTAGCPLAATLSQKFKVLVLERGGVPFNNPNVSFLQNFHIALADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRANPRFIRKVGWDTQLVNESYPWVEKQVVHRPKFSHWQRAVRDGLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASANPQKLTVLVHATVQKIVFDTTGTKPKAIGVIFKDENGKQHQAFLGSGRQSEVIVSSGAIGTPQLLLLSGIGPREELQKFNIPVVLENEFVGKGMADNPMNTIFVPSKRPVQQSLIETVGITNLGVYIETSCGFSQSKDSIHCHHGILSAEIGQLSTIPPKQRSREAVEAFVKSKKDIPIEAFRGGFILSKVANPWSTGELRLINTNVEDNPAVTFNYFSHPYDLKRCVEGIRLAIKVVQSQHVTNYTMCDKESAEKMLNITVQANINLIPKHANDTKSLEQFCRDSVITIWHYHGGCHVGKVVDSEYKVLGVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGLKILRDRLGKLGGV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03789 582 Gene3D - 168 514 - -
Viun5g03789 582 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 521 - -
Viun5g03789 582 SUPERFAMILY FAD/NAD(P)-binding domain 50 574 IPR036188 -
Viun5g03789 582 Pfam GMC oxidoreductase 51 323 IPR000172 GO:0016614|GO:0050660
Viun5g03789 582 Pfam GMC oxidoreductase 419 565 IPR007867 GO:0016614
Viun5g03789 582 Gene3D - 51 564 IPR036188 -
Viun5g03789 582 PANTHER OSJNBA0019K04.7 PROTEIN 25 576 - -
Viun5g03789 582 PIRSF Alcohol_oxidase 34 581 IPR012132 GO:0050660
Viun5g03789 582 ProSitePatterns GMC oxidoreductases signature 2. 282 296 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03789 Viun-Chr5 46564684 46569743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03789 7 580 Miscellaneous Gene Families AT3G56060 49.308 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03789 K15403 - gmx:100784433 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03789 5 46564684 46569743 Viun5g03789 5 46564684 46569743 ECH
Viun5g03789 5 46564684 46569743 Viun10g02530 10 39190182 39196300 PCT