Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03740 ATGAAGAACGACGACGACAACAACAACAACAAAGCCGAACGCAGCAAAGACGCTGCCGTGGGAATCCCAGATTCCCGATTTAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTAGTTCTCCAGATTACTCAAGCTTATCCTCACCAACTTATACAAGGAGCTTCTCATACAGTGAAACTGGAACAAGTGGCCTCACATCTGAGAGAATAGAGAAGCAAGCTCAGAGTTCAAGGAAATCATTTGGTTCTCTCAATGACAATAAGTTGAAAGTATCAGCATCCAATGTACAGAGCCCGTCCGAAGAAGTACAGAAATCTTCATTCGGTGCTAGAGCTACAGATTCTGCTAGGATATTAAAGTTCACTAAGGTGCTTTCTGGGACGATGGTTGCATTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAAGGAGTTTTGAGAAGAAAGCGCCTTGAGTATCTTGACTATATTTCTCAGTATTATGATATTCCTGATGCAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCGAGAACTGTACCTGAAGTGTCATTCTTTCAGCAAGAGCAAGTTCAAAAATCATTGGAGCGTATTCTTTACACATGGGCCATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGACCTTGTCACGCCATTTTTAGTTGTTTTCCTATCAGAATACCTAGAAGGGGCCATAGATAATTGGTCAATGTCTGGTTTATCTTCGGATCAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGTTTGTCAAAGTTGCTTGATGGCATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAGTTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATTCGAGAGGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGAGCAGCTCCAGAGGCTTGATTTCCAAGAATTGGTTATGTTCCTTCAACACCTTCCAACAAAGAATTGGACGCACCAGGAGCTGGAGATGGTACTTTCTCGTGCGTTTATGTGGCACAGCATGTTCAACAGTTGTCCCAGCCATTTAGCTAACTGA 1365 0.4315 MKNDDDNNNNKAERSKDAAVGIPDSRFNQTLRNVQGLLKGRNIPGKILLSQRVSSPDYSSLSSPTYTRSFSYSETGTSGLTSERIEKQAQSSRKSFGSLNDNKLKVSASNVQSPSEEVQKSSFGARATDSARILKFTKVLSGTMVALEKLRELSWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDYISQYYDIPDAERSDDEINMLRQIAVDCPRTVPEVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGAIDNWSMSGLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEEQGLEFLQFAFRWFNCLLIREVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSEQLQRLDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNSCPSHLAN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03740 454 FunFam TBC1 domain family member 131 183 - -
Viun5g03740 454 Pfam Rab-GTPase-TBC domain 161 405 IPR000195 -
Viun5g03740 454 MobiDBLite consensus disorder prediction 54 83 - -
Viun5g03740 454 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g03740 454 Gene3D - 319 454 - -
Viun5g03740 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 135 344 IPR035969 -
Viun5g03740 454 Gene3D - 135 185 - -
Viun5g03740 454 FunFam TBC domain containing protein 319 454 - -
Viun5g03740 454 FunFam TBC domain containing protein 187 318 - -
Viun5g03740 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 194 318 - -
Viun5g03740 454 SMART tbc_4 154 410 IPR000195 -
Viun5g03740 454 MobiDBLite consensus disorder prediction 1 24 - -
Viun5g03740 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Viun5g03740 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Viun5g03740 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 112 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03740 Viun-Chr5 46258538 46264168 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03740 K20360 - gmx:100785695 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03740 5 46258538 46264168 Viun5g03740 5 46258538 46264168 ECH
Viun5g03740 5 46258538 46264168 Viun11g02329 11 37508731 37515993 PCT