Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02329 ATGGACAAGCACCAAGAAGATGAGCGTAACACAGCTGCTACGCTTGACTCCAGGTTGAATCAGACCCTAAAAAATGTTCAAGGGTTACTCAAGGGGCGCAGCATTCCTGGTAAAATATTATTGAGCCGTAGGTCAGACCCTCCGGATAACTCAAACTCAAAGATATCAAATAACCCAAACTCAAAGACATCCTCACCAAGTTACAAGAGGAGCTTTTCTCACAATGATGCTGGTCTAAGTGATCACACATATGGGCCAATAGAGGAGGAATTTCCGAGTACAGACAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACTTCCTTTGGAGGCAACCTGCCTGAAGAAATCCCCAAGTCTATTGTGGGTGCAAGATCTACGGACTCTGCAAGAGTTATGAAGTTCACTAAGGTTCTTTCCGAGACAGTGGTTATATTAGACAAGTTGCGTGAATTAGCATGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTTTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATATCTCAGTATTACGATATTCCAGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTGCCTGATGTTCCATTCTTCCAGCAATCGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCTTGGGCTATTCGCCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCGTTCTTGGTTGTTTTCTTATCAGAGTATTTTGAAGGGGATATAGATAATTGGTCAATGTCTGATTTATCACCAGATACAATCTCTAATGTAGAGGCAGACTGCTACTGCTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGGCACTTGGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGATACCATTCCATCTCATTACGCGCCTTTGGGATACATATTTAGCTGAAGGAGATGACTTACCAGACTTCCTAATATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAATTTGATTTCCAAGAATTGGTAATGTTCCTTCAGAACCTCCCAACAGAGAATTGGACTCATCAGGAGCTTGAGATGGTGCTTTCACAAGCATTCATGTGGCACACCATGTTCAACAACTCTCCCAGCCATTTAATTAGCTGA 1371 0.4267 MDKHQEDERNTAATLDSRLNQTLKNVQGLLKGRSIPGKILLSRRSDPPDNSNSKISNNPNSKTSSPSYKRSFSHNDAGLSDHTYGPIEEEFPSTDKPISIANASKLKVSTSFGGNLPEEIPKSIVGARSTDSARVMKFTKVLSETVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRRKRLEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQSQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMSDLSPDTISNVEADCYCCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHLEDQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDDLPDFLIYIFASFLLTWSDKLQKFDFQELVMFLQNLPTENWTHQELEMVLSQAFMWHTMFNNSPSHLIS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02329 456 ProSiteProfiles TBC/rab GAP domain profile. 159 386 IPR000195 -
Viun11g02329 456 FunFam TBC domain containing protein 321 456 - -
Viun11g02329 456 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 196 320 - -
Viun11g02329 456 FunFam TBC domain containing protein 189 320 - -
Viun11g02329 456 FunFam TBC1 domain family member 133 185 - -
Viun11g02329 456 MobiDBLite consensus disorder prediction 45 78 - -
Viun11g02329 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 136 346 IPR035969 -
Viun11g02329 456 MobiDBLite consensus disorder prediction 35 93 - -
Viun11g02329 456 SMART tbc_4 156 412 IPR000195 -
Viun11g02329 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 322 444 IPR035969 -
Viun11g02329 456 Pfam Rab-GTPase-TBC domain 162 408 IPR000195 -
Viun11g02329 456 Gene3D - 321 456 - -
Viun11g02329 456 Gene3D - 134 185 - -
Viun11g02329 456 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 92 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02329 Viun-Chr11 37508731 37515993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02329 K20360 - gmx:100819281 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03740 5 46258538 46264168 Viun11g02329 11 37508731 37515993 PCT