Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03689 ATGCCAACTATTATGCTTAGGTTTTTTCTTCTTTACAACCTCCTTCACCCATTTCTTCTGAGTCTGGTTCCTAAGAAGGTGCGAGCCATTCTCTCTCCTTCCTGGTTCCGATCCTCCACCACCACCACACCACCAACACCAACACCAACACCAACACCATCATCTTCTTCTTCGAGTGCCTTCACAAGAATTTCAATGTCGATGGATCCCACCGAGCTGAAGCGCGTGTTTCAGATGTTCGACCGCAATGGCGACGGGCGAATCACGCAGAAGGAGCTGAGCGATTCGTTGGACAATCTGGGTATTTTCATTCCCGACAAGGAACTGGCCGTGATGATCGAGAGGATAGACGTTAACGGAGATGGGTGCGTGGACATCGACGAGTTCGGGGAGCTCTACCAGACGATCATGGACGAGCGTGACGAGGACGACGACATGCGAGAGGCCTTCAACGTCTTCGATCAGAACGGCGATGGCTTCATCACCGTGGAAGAGTTGAGGACCGTTTTGTCCTCGCTCGGGTTGAAACAGGGAAGAACAGTGGAGGATTGCAAGAAGATGATCATGAAGGTGGACGTTGATGGAGATGGGATGGTCGATTACAAAGAGTTCAAGCAGATGATGAAAGGGGGTGGCTTTAGTGCTCTCACCTGA 654 0.5107 MPTIMLRFFLLYNLLHPFLLSLVPKKVRAILSPSWFRSSTTTTPPTPTPTPTPSSSSSSAFTRISMSMDPTELKRVFQMFDRNGDGRITQKELSDSLDNLGIFIPDKELAVMIERIDVNGDGCVDIDEFGELYQTIMDERDEDDDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03689 217 CDD EFh 72 129 IPR002048 GO:0005509
Viun5g03689 217 Pfam EF-hand domain pair 144 209 IPR002048 GO:0005509
Viun5g03689 217 Pfam EF-hand domain pair 72 134 IPR002048 GO:0005509
Viun5g03689 217 FunFam Calmodulin-like protein 3 68 137 - -
Viun5g03689 217 SMART efh_1 108 136 IPR002048 GO:0005509
Viun5g03689 217 SMART efh_1 145 173 IPR002048 GO:0005509
Viun5g03689 217 SMART efh_1 183 211 IPR002048 GO:0005509
Viun5g03689 217 SMART efh_1 72 100 IPR002048 GO:0005509
Viun5g03689 217 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Viun5g03689 217 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Viun5g03689 217 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 144 209 - -
Viun5g03689 217 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Viun5g03689 217 FunFam calmodulin-like protein 3 139 212 - -
Viun5g03689 217 SUPERFAMILY EF-hand 71 211 IPR011992 -
Viun5g03689 217 PRINTS Parvalbumin signature 191 204 - -
Viun5g03689 217 PRINTS Parvalbumin signature 154 170 - -
Viun5g03689 217 PRINTS Parvalbumin signature 132 150 - -
Viun5g03689 217 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Viun5g03689 217 Gene3D - 54 133 - -
Viun5g03689 217 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Viun5g03689 217 MobiDBLite consensus disorder prediction 38 61 - -
Viun5g03689 217 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Viun5g03689 217 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Viun5g03689 217 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Viun5g03689 217 Gene3D - 134 211 - -
Viun5g03689 217 CDD EFh 149 209 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03689 Viun-Chr5 45992961 45994338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03689 5 215 EF-hand Containing Proteins AT2G43290 64.352 2.54e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03689 K13448 - gmx:100527487 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03689 5 45992961 45994338 Viun5g03689 5 45992961 45994338 ECH
Viun5g03689 5 45992961 45994338 Viun11g02293 11 37364131 37365181 PCT