Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02293 ATGGAGGCGATGGACCTGAGGCGCGTGTTCGAGATGTTCGATCGGAACGGGGACGGGAGAATATCGGCGAAGGAGCTGAGAGATTCGTTGGTGAATTTGGGGATAGAGATTCCGGAGAAGGAGCTGGCGGAGATGATAGCGAGGATCGACGTCAACGGCGACGGCTGCGTGGACATGTCGGAGTTCGGGGAGCTGTACGAGACGATAATGGAGGAGCGCGACGAGGAGGAGGACATGCGGGAGGCCTTCAACGTCTTCGACCAGAACCGCGATGGCTTCATCACCGTCGACGAGCTCCGCGCCGTGCTGGCCTCCCTGGGCCTCCAGCAAGGGAAGAGCATGGAGGAGTGCCGGAAGATGATCGTGAAAGTGGATGTTGACGGAGATGGCATGGTCAATTACAAGGAATTCAGGCAGATGATGAAGGGTGGCGGAGGATTCACTGCTATTGGTTAA 456 0.5746 MEAMDLRRVFEMFDRNGDGRISAKELRDSLVNLGIEIPEKELAEMIARIDVNGDGCVDMSEFGELYETIMEERDEEEDMREAFNVFDQNRDGFITVDELRAVLASLGLQQGKSMEECRKMIVKVDVDGDGMVNYKEFRQMMKGGGGFTAIG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02293 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Viun11g02293 151 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Viun11g02293 151 SUPERFAMILY EF-hand 5 141 IPR011992 -
Viun11g02293 151 Gene3D - 68 144 - -
Viun11g02293 151 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Viun11g02293 151 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Viun11g02293 151 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Viun11g02293 151 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Viun11g02293 151 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Viun11g02293 151 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Viun11g02293 151 PRINTS Parvalbumin signature 124 137 - -
Viun11g02293 151 PRINTS Parvalbumin signature 65 83 - -
Viun11g02293 151 PRINTS Parvalbumin signature 87 103 - -
Viun11g02293 151 FunFam Calmodulin 1 2 143 - -
Viun11g02293 151 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Viun11g02293 151 CDD EFh 82 142 IPR002048 GO:0005509
Viun11g02293 151 SMART efh_1 116 144 IPR002048 GO:0005509
Viun11g02293 151 SMART efh_1 5 33 IPR002048 GO:0005509
Viun11g02293 151 SMART efh_1 41 69 IPR002048 GO:0005509
Viun11g02293 151 SMART efh_1 78 106 IPR002048 GO:0005509
Viun11g02293 151 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Viun11g02293 151 CDD EFh 5 62 IPR002048 GO:0005509
Viun11g02293 151 Gene3D - 3 67 - -
Viun11g02293 151 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02293 Viun-Chr11 37364131 37365181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02293 1 145 EF-hand Containing Proteins AT1G05990 72.603 9.46e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02293 K13448 - gmx:100796922 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03689 5 45992961 45994338 Viun11g02293 11 37364131 37365181 PCT