Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03682 ATGTTGGTCGCTTCTGTGTTTGGTTTGGGACGAATCCATGTCTCCCTTCTTCCCAAAACCACTCAATTTTTTTCCTCAAAACCTCACCCAGTGTCTCAACTTCGAGCCTCTGTGACTAACAAAAGAACCAGAAAAAGCTTGCAGCTTCAGCAGCACGTTCCCGAAATTGAAACGGAAAAGCATCAGAAAGAGATCCCAGATTTTGCACTTGCACGCGCAAGATCAAATGAATTGGTTCATAGTGGTGAAGCCCCTGTCAACTGGGAAAAGGTTCTTCAAGGAATTCGCCAAATGAGGAGTTCAGCAGATGAACATGAACCACTTGCGCGCGAGGAAACTTCTCATAATACTGTACCTCCTAAGGAAAGAAGATTTGCTGTTCTTGCATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCATGGAGCGACTCAACGTCTTCAAGAAAATGGCCTGCTTACTGCTGAAGCAATGAACAAAGCTGATGAAGAAACCATAAAAAAGTTGATTTACCCTGTTGGATTTTATACAAGAAAAGCGAGTTACTTGAAGAAAGTTGCTGACATTTGCCTCATGAAGTATGATGGAGACATACCTAGCTCAATCCAGGAACTACTCTTGCTCCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTTGTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCACGTACACCGTATCTGCAATCGTCTTGGGTGGGTTTCTAGATCAGGCTCAAAACAGAAAACTTCGACACCAGAAGAAACCAGACAAAGGCTGCAACTATGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGATCAATTTGTACTCCTCTACGGCCTCACTGTGGAGAGTGCAGTGTAAGTAGCTTCTGTCCATCAGCATACAAGGAGGTTTCAAGCTTTTCATCAAAGTCCAAAAAACTTACATTGAACAAGAAGCCTTAA 993 0.431 MLVASVFGLGRIHVSLLPKTTQFFSSKPHPVSQLRASVTNKRTRKSLQLQQHVPEIETEKHQKEIPDFALARARSNELVHSGEAPVNWEKVLQGIRQMRSSADEHEPLAREETSHNTVPPKERRFAVLASSLLSSQTKEHVTHGATQRLQENGLLTAEAMNKADEETIKKLIYPVGFYTRKASYLKKVADICLMKYDGDIPSSIQELLLLPGVGPKIAHLVMICGWNNVQGICVDTHVHRICNRLGWVSRSGSKQKTSTPEETRQRLQLWLPREEWVPINPLLVGFGRSICTPLRPHCGECSVSSFCPSAYKEVSSFSSKSKKLTLNKKP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03682 330 ProSitePatterns Endonuclease III family signature. 198 227 IPR004036 -
Viun5g03682 330 Hamap Endonuclease III-like protein 1 [NTHL1]. 84 313 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Viun5g03682 330 MobiDBLite consensus disorder prediction 99 119 - -
Viun5g03682 330 SMART endo3end 133 289 IPR003265 GO:0006284
Viun5g03682 330 FunFam Endonuclease III homolog 223 313 - -
Viun5g03682 330 FunFam Endonuclease III-like protein 1 120 224 - -
Viun5g03682 330 SMART ccc3 290 310 IPR003651 GO:0051539
Viun5g03682 330 Pfam HhH-GPD superfamily base excision DNA repair protein 130 268 IPR003265 GO:0006284
Viun5g03682 330 SUPERFAMILY DNA-glycosylase 115 314 IPR011257 GO:0003824|GO:0006281
Viun5g03682 330 MobiDBLite consensus disorder prediction 99 121 - -
Viun5g03682 330 Gene3D - 225 313 IPR023170 -
Viun5g03682 330 Gene3D Hypothetical protein; domain 2 110 224 - -
Viun5g03682 330 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 39 323 - -
Viun5g03682 330 Pfam Helix-hairpin-helix motif 195 222 IPR000445 GO:0003677
Viun5g03682 330 CDD ENDO3c 125 287 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03682 Viun-Chr5 45971246 45974464 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03682 K10773 - gmx:100805799 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03682 5 45971246 45974464 Viun5g03682 5 45971246 45974464 ECH
Viun5g03682 5 45971246 45974464 Viun11g02258 11 37236340 37242050 PCT