Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02258 ATGTATACAATTTCACACATCAAAATGTCTCTGGTACCGCAACTCTCAAATCTATCACTGGTCGTTTCAGTTTCTTCTCCGTTGGGCGTGATCATGTCTGAGAAAACTCAAACCTTTTGCAAAGCATCTTCCCCCAATCCCAACTCACCCACTTCCTCTGTTGAAGCTTCCCACTCCAAAGTTCGTGTCTTTGTCCGGAGAAATAAAAAACCCAGAAGCATGGTTGTCAAACTTGAAGGAGAGGACCATTTTCCATCAACCCAGGATCACAAGGTTCTTGGCCTTCCAGAAATTGAAGAATTTGCGTACTGTGGAGCAAATAAATTGACTCGGCGTGTGAAATCTGAAATGGAATCAGAGGGGGCTTCAGTGGCAAGTGAAGTTGGTTCAACTAGACCTGGTGGTGTATCACCTGCCCACTGGGAAAAGGTGCTTGAGGGGATTCGAAAAATGAGGTGTTCTGGTGATGCACCAGTGGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCCAAGGAGAGAAGATTTGCTGTGCTGGTATCTTCTCTTTTATCTAGCCAAACAAAGGATCCAGTTACTCATGGAGCAATTCAGCGCCTTCTTCAAAATGATCTGCTTACAGCTGAAGCAATCAATAATGTAGATGAAGAGACAGTCAAAAAGTTGATCTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACAATGGAGACATACCAAGCTCAATTGACCAACTACTGTTACTTCCAGGCATTGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAACCGCCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAAAACTTCAACACCTGAAGAGACAAGAGAGTCTCTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTATTGGTAGGCTTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGTGTAAGAGACTTGTGTCCCTCTGCCTTCAAGGAGGCCTCAAACTCAAGCCCATCTTCCAAGCCCAAAAAGCCCGGGCTGAACAAGAAGCCTTAA 1158 0.4421 MYTISHIKMSLVPQLSNLSLVVSVSSPLGVIMSEKTQTFCKASSPNPNSPTSSVEASHSKVRVFVRRNKKPRSMVVKLEGEDHFPSTQDHKVLGLPEIEEFAYCGANKLTRRVKSEMESEGASVASEVGSTRPGGVSPAHWEKVLEGIRKMRCSGDAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTAEAINNVDEETVKKLIYPVGFYTRKATNLKKIANICLMKYNGDIPSSIDQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSVRDLCPSAFKEASNSSPSSKPKKPGLNKKP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02258 385 FunFam Endonuclease III-like protein 1 173 277 - -
Viun11g02258 385 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 62 376 - -
Viun11g02258 385 Pfam HhH-GPD superfamily base excision DNA repair protein 182 323 IPR003265 GO:0006284
Viun11g02258 385 Gene3D - 276 366 IPR023170 -
Viun11g02258 385 Gene3D Hypothetical protein; domain 2 164 275 - -
Viun11g02258 385 MobiDBLite consensus disorder prediction 364 385 - -
Viun11g02258 385 Hamap Endonuclease III-like protein 1 [NTHL1]. 137 366 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Viun11g02258 385 SUPERFAMILY DNA-glycosylase 156 375 IPR011257 GO:0003824|GO:0006281
Viun11g02258 385 CDD ENDO3c 178 340 IPR003265 GO:0006284
Viun11g02258 385 SMART endo3end 186 342 IPR003265 GO:0006284
Viun11g02258 385 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 344 360 IPR004035 -
Viun11g02258 385 SMART ccc3 343 363 IPR003651 GO:0051539
Viun11g02258 385 FunFam Endonuclease III homolog 276 366 - -
Viun11g02258 385 ProSitePatterns Endonuclease III family signature. 251 280 IPR004036 -
Viun11g02258 385 Pfam Helix-hairpin-helix motif 248 276 IPR000445 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02258 Viun-Chr11 37236340 37242050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02258 K10773 - gmx:100818398 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03682 5 45971246 45974464 Viun11g02258 11 37236340 37242050 PCT