Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03563 ATGGTGTTGCAGAAGAGGTCATATTATAGCTTTAATGGACATCAGGTGCCAACCAAGCGCCGAGCTACTAGATCAGCTAGGAGGAACGCCACATTTCAAAGAAGGTTGGAAGAGAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACAATTTATTGCAAGAGAAACAGAATCCAACCACATGTAGCGATAGTTCATTGGAAAAAGATACGGATGGATTTGTAAAAGAGGAGTGCCAAGATGCAAATAAACCATTAAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAAAAGATGTCAGCATGAATTTGTCAAAGAAGGATGCCCAGATGCAAATAAACCATTAAAAGCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAATGTTTCTCTAATATTTCTTCCCAAGTGTACAATCAAAATTGTTGTTTGAAGGAATTCGCAGTTCATGAAATTGAAGGCCATTCATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAAGTTTGTTACTGAAACACTGGTGGATGGGAAAGGCCAAAATGGAACTGAAAATATAGCTAGCAAAGTTGAATTAGCTTCTTCTGGAAGTCCAGAGAGTATTGGCTGCAAGTTAGATGGTGATGTAAGTAAAGTAAAAGATGTTAAGTTTGGGAAGACTCCCATGGATACTGGGACTGTGTTGTGCTGTTCTGAGGATCACATGGATGAAAAACCTCCAGCACTGGTAAGTTCTTGTTGCAATGCCAAGTTGTCTGAGTATGACGACAGCATGCCTCATAGCTCATTGTCCAAAGGTTGTGACAATGTACTAGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTAGTACCAAAATAAAGTCCTGTAGACCAATTACTTGTATAGATGATAGAAAAATAAAGAAAAGATTGGCTTCAAAATATCTTAAAGTTGCTCAAGAATCCAAGCCTGATAAGTTATCTAATAGTGTTTTGGATGGAAATTTGAAGCCAGTTTACAGCAATAGGAAGAACTACTACAAAAGCCAAAGATCTCAAATGAACATTCCTTTCAAAAAGAGGAAACTTTTTAAATGTAGCTCTGATACAAATTCTAACGGATATATCAGAAGTGGTGACGCTTATTTTTCACTCAAGAATGAAACGAATCAAAGTGTTTCATATTCATCTTCAGGGATGAGCAAAGATCATGGAACGTCATCCTTGGGACACTCTGCATTACGGTCTAGAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTTATAGAGATTCCAGAAACTGCAACCATTGGGTCCTTAAAGAGGACAGTGATGGAGGCAGTGACTGCAGTACTTGGAGGTGGATTACGTGTGGGAGTGATTCTCCATGGAAAGAAGGTTAGAGATGACAGTAAAACTCTACTCCAGACTGGAATTTCTCATGATAACCACCTGGATGCTTTGGGATTCGCCTTGGAGCCTAATTTTTCACAGAATCTACCACCTGCATGTGCAACTAGTTCTCTTCGCGTTCCTAGTGCGGATATGCCTCAACCTTTTATGGGGTATCCTTCAAGTCCTGCTGTAATTCATCAAAGGATTCATGGCTTTTCTAACATGTTAGCTGAGCATCAAGCAACAGGTTTAGGTAACCTCGTCGAAAGTGATCATGATTCAGCTCCTTCTCCCATCAACACATCAGGTGAAAAAAAATTGTCAGATTCTAAAGAACTTATTACTGTTCCTGAAATGGGTATGGAGGCACTGGCTGTGCTACCTGGACATCAAAAGTCAAAGCGAACCGAGATTGCACAGCGCCGTATTCGTAGGCCTTTTTCTGTTGCTGAAGTGGAAGCATTGGTTCAAGCAGTTGAAAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGATAATGCAAAGCATCGAACATATGTGGATTTGAAGGTAAAAGCATGTGTGAACCTGCAGGATAAATGGAAAACACTGGTGCACACTGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAACCTGTTCCTCAGGAACTTTTGGATAGGGTTCTAACGGCCCACGCATATTGGTCCCAGCAGCAGACTAAGCAACAGCTCAAGCACCATTCAAAACCTTGCCTTCTCCTTTAA 2178 0.4086 MVLQKRSYYSFNGHQVPTKRRATRSARRNATFQRRLEENQMCAFDLLATVADNLLQEKQNPTTCSDSSLEKDTDGFVKEECQDANKPLKTELSDEASCDKRCQHEFVKEGCPDANKPLKAELSDEGSSDRKCFSNISSQVYNQNCCLKEFAVHEIEGHSCIASIVTSSSCSEKFVTETLVDGKGQNGTENIASKVELASSGSPESIGCKLDGDVSKVKDVKFGKTPMDTGTVLCCSEDHMDEKPPALVSSCCNAKLSEYDDSMPHSSLSKGCDNVLVDSRDDDENFSGCAHPSTKIKSCRPITCIDDRKIKKRLASKYLKVAQESKPDKLSNSVLDGNLKPVYSNRKNYYKSQRSQMNIPFKKRKLFKCSSDTNSNGYIRSGDAYFSLKNETNQSVSYSSSGMSKDHGTSSLGHSALRSRDSHVKLRIKSFRVPELFIEIPETATIGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDSKTLLQTGISHDNHLDALGFALEPNFSQNLPPACATSSLRVPSADMPQPFMGYPSSPAVIHQRIHGFSNMLAEHQATGLGNLVESDHDSAPSPINTSGEKKLSDSKELITVPEMGMEALAVLPGHQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKVKACVNLQDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHSKPCLLL 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03563 725 SMART sant 617 670 IPR001005 -
Viun5g03563 725 SUPERFAMILY Ubiquitin-like 419 509 IPR029071 -
Viun5g03563 725 MobiDBLite consensus disorder prediction 564 583 - -
Viun5g03563 725 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 718 IPR031105 -
Viun5g03563 725 CDD SANT_TRF 619 677 - -
Viun5g03563 725 Gene3D - 606 718 - -
Viun5g03563 725 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 613 672 IPR017930 -
Viun5g03563 725 SUPERFAMILY Homeodomain-like 619 708 IPR009057 -
Viun5g03563 725 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03563 Viun-Chr5 45286312 45292187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03563 - - gmx:100780881 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03563 5 45286312 45292187 Viun5g03563 5 45286312 45292187 ECH
Viun5g03563 5 45286312 45292187 Viun1g03080 1 39146462 39151335 ECH