Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03540 ATGGGTCAGACCCTTAGTTGCACGCCCAACCATGACCACGGCCTCTTCACCGCCGTGCAACAGGGTGACCTCCAAATTGTCACCACACTCTTAGAGGCCGACCCCTCTCTCTTCCACCAAACCACTCTCTACGATCGCCACTCTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTCTCTAGGCTTTTGGATGGATCTCTCAATCCAGATGTTTTGAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCGTGTGTCGAGAAGCTTCTTCAAGCCGGAGCTAATGTGTTAATGTTTGATACCATTTCCGGGAGAACCTGCTTACACTATGCCGCATACTACGGTCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCGCGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTGTTGGACAGTGGAGCTCTTGTTTGTGCTTCAACCGGTGGATATGGCTGTCCCGGGAGTACTCCGCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCACCGCGATGCATCTGGGCGGATACCATACATGGTTGCTCTGAAACACAAACACGGAGCCTGTGCATCATTGCTGAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGCGAGCTTAATCCTGAAGCTAAAGCTTTATTGGAACAGGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGCGCTTACTCTCTTCCATCCCCATCACATTCTGATGGGGTAACCGATGATGTGTCTGAGGTTAGTGAGTCGGAATTATGCTGCATCTGCTTCGAGCAGGCATGCACAATCGAAGTTCAGAGCTGTGGGCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCGAACCCTGCCACAGCATGTCTCACTCCACCGGTTTGTCCATTCTGTAGAAGCGCCATAACAAGACTAGTGGTTGTGAAAACAGAATACCATGATGAAACTGATCTAGACGGTGTTGACACGAACTGTTCGAAGCTGAACAAGACATCGAAGAAATTCAGAAACCTGAATGACAGTGGTAGCAGCAGCTTCAAGGGGTTATCCAGTGTAAGTTCATTCGGGAAGTTGGGTAGCCGCAGCTCAGGGAGGATTGCTGCTGAGTGGGTCGATAAACAGTGA 1335 0.4989 MGQTLSCTPNHDHGLFTAVQQGDLQIVTTLLEADPSLFHQTTLYDRHSPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTISGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGVTDDVSEVSESELCCICFEQACTIEVQSCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSAITRLVVVKTEYHDETDLDGVDTNCSKLNKTSKKFRNLNDSGSSSFKGLSSVSSFGKLGSRSSGRIAAEWVDKQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03540 444 PANTHER ROLLING PEBBLES, ISOFORM B 152 247 - -
Viun5g03540 444 MobiDBLite consensus disorder prediction 411 430 - -
Viun5g03540 444 Gene3D - 6 144 IPR036770 -
Viun5g03540 444 Gene3D - 145 197 IPR036770 -
Viun5g03540 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Viun5g03540 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Viun5g03540 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 387 IPR013083 -
Viun5g03540 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Viun5g03540 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Viun5g03540 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Viun5g03540 444 MobiDBLite consensus disorder prediction 411 444 - -
Viun5g03540 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Viun5g03540 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Viun5g03540 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Viun5g03540 444 SUPERFAMILY RING/U-box 315 375 - -
Viun5g03540 444 Gene3D - 198 251 IPR036770 -
Viun5g03540 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Viun5g03540 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Viun5g03540 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Viun5g03540 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Viun5g03540 444 SUPERFAMILY Ankyrin repeat 9 250 IPR036770 -
Viun5g03540 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Viun5g03540 444 Pfam Ankyrin repeat 195 225 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03540 Viun-Chr5 45154678 45157519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03540 14 225 Miscellaneous Gene Families AT3G12360 31.944 1.80e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03540 - - gmx:100786708 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03540 5 45154678 45157519 Viun5g03540 5 45154678 45157519 ECH
Viun5g03540 5 45154678 45157519 Viun11g02121 11 36438250 36440963 PCT