Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02121 ATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTGCCTCTTTCCTCTTTTTCCATTTCTTCACACGCAATTTCGTGCTAATGTTCTTTTCTTTTTTCTCCTTTTCTGCCAATTGCTGCAGGTTTTATCATGGCTTTTGGATGGATCTGTGAACCCGGATGCGTTGAATCGCCAAAAGCAGACACCGCTAATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCCAATGTGTTGATGTTTGATGCGTGCTATGGAAGAACCTGCTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTGAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCATTGCACTTGGCAGCCCGTCAAAGACGGCCTGAATGTGTACATATTCTACTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGGTCCTTGGATTGCATCAGGGAACTGTTGGCATGGGGTGCTGATCGCCTTCAACGTGATGCTTCTGGGCGTATACCTTATGTCGTTGCTCTTAAGCACAGACATAACGCATGTGCAGCATTACTGAATCTTTCATCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAAGAATTATTAGAGCAGGCCCTGATGAACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCAGCACACTCTGATGGGATAGATGACAGCATTTCTGAGGTTAGTGAGACGGAGTTATGTTGCATCTGCTTTGAGCAAGTGTGCACAATTGAGGTGCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTATTGTCCCACCAGTTTGTCCATTCTGCAGAAGCAGCATAGCAAGATTGGTGGTTGCGAAAAAAGAAAGCCCTCATGAAATTGATCAAGATGGTGTTGACATTACTTGTTCCAAGCCTAGCAAGTCAAGGAAAACCAGAAACATGAACGAGGGTGGCAGCAGCAGCATCAAGGGACTATCAAGTGTGAACTCATTTGGAAAGATTGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1302 0.4693 MITTLLFILPLLMARSRCLFPLFPFLHTQFRANVLFFFLLFCQLLQVLSWLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPDAKELLEQALMNANREREKNILKGSDYSLPSPAHSDGIDDSISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRIVPPVCPFCRSSIARLVVAKKESPHEIDQDGVDITCSKPSKSRKTRNMNEGGSSSIKGLSSVNSFGKIGGRSSGKIAAENEWEDDKQQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02121 433 Coils Coil 258 278 - -
Viun11g02121 433 ProSiteProfiles Ankyrin repeat profile. 180 212 IPR002110 GO:0005515
Viun11g02121 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 371 IPR013083 -
Viun11g02121 433 ProSiteProfiles Ankyrin repeat region circular profile. 180 206 - -
Viun11g02121 433 SUPERFAMILY Ankyrin repeat 40 233 IPR036770 -
Viun11g02121 433 CDD RING-HC_XBAT31-like 298 362 - -
Viun11g02121 433 PANTHER HOMEOBOX PROTEIN WARIAI 60 384 - -
Viun11g02121 433 SMART ANK_2a 64 93 IPR002110 GO:0005515
Viun11g02121 433 SMART ANK_2a 143 172 IPR002110 GO:0005515
Viun11g02121 433 SMART ANK_2a 98 128 IPR002110 GO:0005515
Viun11g02121 433 SMART ANK_2a 180 209 IPR002110 GO:0005515
Viun11g02121 433 SMART ANK_2a 213 242 IPR002110 GO:0005515
Viun11g02121 433 Gene3D - 32 239 IPR036770 -
Viun11g02121 433 MobiDBLite consensus disorder prediction 383 433 - -
Viun11g02121 433 ProSiteProfiles Zinc finger RING-type profile. 306 355 IPR001841 -
Viun11g02121 433 Pfam Ankyrin repeats (many copies) 180 218 IPR002110 GO:0005515
Viun11g02121 433 SUPERFAMILY RING/U-box 299 360 - -
Viun11g02121 433 ProSiteProfiles Ankyrin repeat region circular profile. 64 91 - -
Viun11g02121 433 ProSiteProfiles Ankyrin repeat region circular profile. 143 168 - -
Viun11g02121 433 Pfam Ankyrin repeats (3 copies) 46 120 IPR002110 GO:0005515
Viun11g02121 433 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Viun11g02121 433 Pfam Ankyrin repeat 144 171 IPR002110 GO:0005515
Viun11g02121 433 MobiDBLite consensus disorder prediction 391 413 - -
Viun11g02121 433 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02121 Viun-Chr11 36438250 36440963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02121 45 197 Miscellaneous Gene Families AT5G02620 30.189 2.62e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02121 - - gmx:100800611 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03540 5 45154678 45157519 Viun11g02121 11 36438250 36440963 PCT