Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03495 ATGGAGTTCATCATATTACTTTATGGTGCAACAATGCTGTACTTGTGTTTCCTGATCTGGAAATTGTTCGATCAGAAAAGGGACCAAGAGTGTTACATATTGGACTACCAACTCTACAAGCCAAGCGATGAAAGAAAGCTTGGAACCGAATGCTGTGGCAGGATCATAGAGAGGAACAAGCATTTGGGTCTGAACGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCCGGCATTGGCGAGGAAACGTATGCCCCAAGCAACGTCATCGAGGGTCGTGAGGCAGCTCCGACGCTGAACGATGGTGTCAAAGAAATGGAGGAGTTTTTTCGTGACAGCATTGCTAAACTCCTTGCAAGTTCAGGCATTTCGCCTTCGGAGATCGATGTGCTTGTGGTGAATGTTTCCATGTTCTCCGCTGTTCCTTCCCTGACTTCAAGAATCATCAACCGCTACAAGATGAGGGAGGACATAAAAGCTTACAACCTCACTGGGATGGGTTGCAGTGCCAGCCTCATTTCGCTGGACATCATTAAAAACGTGTTCAAGTCGCAGAAGAACAAGTTCGCGGTTCTGGTGACTTCCGAGTCTCTCAGTCCGAACTGGTATAACGGCAACGACAGATCGATGATTCTCGCGAACTGTTTGTTCCGGAGTGGTGGGTGTGTCATACTTTTGACAAACAAAAGATCGTTCAAGCACAGGGCCATGATGAGGTTGAAGTGTTTGGTGAGGACTCACCATGGGGCTAGAGAGGATGCTTACAGTTGCTGCAATCAGAAGGAAGACGAGGAAGGAAGGCTCGGGTTTTATCTTGGCAAAAACCTTCCCAAGGCAGCTACAAGAGCATTTGTTGACAACCTTAGGGTGTTGTCACCCAAGGTTTTGCCAACCAGGGAGTTGCTAAGGTTTATGGTCGTGTCCCTGTTCAGAAAAGTGAGGGAAATTTGTTCCCTTAAGTCTTCAAGTGGGGGATCTAGTAAATCCAATAACAAATCTCCTTTGAACTTCAAGACTGGGATTGAACATTTTTGCCTGCACACAGGAGGAAAAGCTGTGATTGATGGGGTTGGAATGAGCTTAGATCTGTGTGAATATGAGCTTGAGCCAGCAAGAATGACACTGCACAGGTTTGGCAACACTTCTGCCAGTAGTTTGTGGTACGTGCTGGGGTACATGGAGGCCAAAAAGAGGCTCATGAAGGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGTTGTATGTGGGAGGTAATGAAGGATCTCAGGGATCGTCCTAATGTGTGGGACGAATGCATTGATGACTACCCACCGGAGTCCTTGGCCAACCCTTTCATGGAGAAGTTTGGTTGGATCAATGATGTTCAAGAAGCAACCAACTTCAAACTCCATGGTTTTCTCAAGTAA 1422 0.4662 MEFIILLYGATMLYLCFLIWKLFDQKRDQECYILDYQLYKPSDERKLGTECCGRIIERNKHLGLNEYKFLLKAVVNSGIGEETYAPSNVIEGREAAPTLNDGVKEMEEFFRDSIAKLLASSGISPSEIDVLVVNVSMFSAVPSLTSRIINRYKMREDIKAYNLTGMGCSASLISLDIIKNVFKSQKNKFAVLVTSESLSPNWYNGNDRSMILANCLFRSGGCVILLTNKRSFKHRAMMRLKCLVRTHHGAREDAYSCCNQKEDEEGRLGFYLGKNLPKAATRAFVDNLRVLSPKVLPTRELLRFMVVSLFRKVREICSLKSSSGGSSKSNNKSPLNFKTGIEHFCLHTGGKAVIDGVGMSLDLCEYELEPARMTLHRFGNTSASSLWYVLGYMEAKKRLMKGDRVLMISFGAGFKCNSCMWEVMKDLRDRPNVWDECIDDYPPESLANPFMEKFGWINDVQEATNFKLHGFLK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03495 473 CDD CHS_like 12 421 - -
Viun5g03495 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 456 IPR012392 GO:0006633|GO:0016020|GO:0016747
Viun5g03495 473 SUPERFAMILY Thiolase-like 18 232 IPR016039 GO:0016746
Viun5g03495 473 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Viun5g03495 473 Gene3D - 57 423 IPR016039 GO:0016746
Viun5g03495 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 341 422 IPR013747 -
Viun5g03495 473 SUPERFAMILY Thiolase-like 243 424 IPR016039 GO:0016746
Viun5g03495 473 PANTHER 3-KETOACYL-COA SYNTHASE 15 443 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03495 Viun-Chr5 44879808 44881828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03495 19 468 Acyl Lipid Metabolism Gene Families AT2G28630 67.834 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03495 K15397 - gmx:100776947 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03495 5 44879808 44881828 Viun5g03495 5 44879808 44881828 ECH
Viun5g03495 5 44879808 44881828 Viun11g02067 11 36102249 36104154 PCT