Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03439 ATGGGAAGCAGTACGACCCTTTTGGTGTTATTGTTCGTTCTTGGTAATGGCGTGGCAGTAACAATGGGGCGGTTCTTGAGAACAGAGGTGGAAGTCATAGAAGAGGATCTTGATGAAGAGTTGTTCTTGGTGAAGGAATCGAAGCTCGTGGCCAACACCAGCGCTGGGAAGATGGTAGTGTTTTATGATAGGAGAGTTCCCGAGAGATTGCAGATTGCTACCACTACTATGGAACCAAGGTCCCTTATGATTCATCGCTTCCTTGCTGCCACTAATGTCATGTACGTGGTTTCAGGGGAAGCAAATTTGGGATACATAGACCAAAACAACCAGAGGCTGACGCAAATTCGTCTGAGGGAGGGAGATGTATACCAAATTCCAGCTGGTTCTGCATTCTATATAGCGAACGAGGAAAGTGATCAAAAGCTTGAAATTATCAGCGGCATTGAACCCTCTCAAGGCTTGGGAGATGATGTTTTCCAATCTTTCTATATTGGAGGAAGAGCAAATTCAGGACTTTCTGGATTCAAGAAAGAAATCCTTGAAGCTGCTTTTAACGTATCACAAGAAGAGTTGGGAACATTCTTCACCGGCCAAAAGATGGGAGTGATTGTGCCTTTGCAAGGTTCACATGCCACAGGCAAATGGAGCAAGTTCCTTGAGCTTAAGGAGGAAGAAAAACTGCAACAGCTACGGGAGATGGTGCAGCAAGGACAAGAAAACGAAGAAGTGGAGAAGGAGGATGAGGAATCTGGTGATGATGAAGAAGAGCAGCAACAAACAAGTTTGCCATGGAGGATGCTCTTCAAATCTGTATTCGGAGAAGAAATCAAGAACACGAGGGAGAAGATTACTGAAGACCCCCCTCGCTCTTACAACCTTAATAAGAGAAAACCAGATTTTGAAAACAAATATGGTTGGAGGGTTGCTGTAGATGGCTCTCAGTATCATCCACTCAAAAGTTCAGGCATTGGCATCTATCATGAGTATCTCTCAGCTGGATCAATGATGGCACCCCGTGTGAATCCAATGGCAACGGAATATGGCATAGTGGTAAATGGTTCAGGTAGGGTTCAAGTTCTGTTTCCAAACGGAAGCAATGCAATGGACACTAACATCACAAAAGGTGATGTGTTCTTCATTCCAAGTAACTTTCCCTACTGCGAAATAGCACACAAGGGTGAATCACTAGAGCTCTTGGGGTTCACCACCTCGGCTCAGAGGAATAGGCCAGTGGTTCTGGTGGGTGCCAGGTCGGTCGTAAGGACCATGGAGGGACCCGAGCTTGCAACTTCGTTTGGGGTGAGTAAAGAGGAGATTAAGCACTTGGTTAGTGCACAACACGAATCTGTGATTCTACCAACTCCGTGA 1371 0.4566 MGSSTTLLVLLFVLGNGVAVTMGRFLRTEVEVIEEDLDEELFLVKESKLVANTSAGKMVVFYDRRVPERLQIATTTMEPRSLMIHRFLAATNVMYVVSGEANLGYIDQNNQRLTQIRLREGDVYQIPAGSAFYIANEESDQKLEIISGIEPSQGLGDDVFQSFYIGGRANSGLSGFKKEILEAAFNVSQEELGTFFTGQKMGVIVPLQGSHATGKWSKFLELKEEEKLQQLREMVQQGQENEEVEKEDEESGDDEEEQQQTSLPWRMLFKSVFGEEIKNTREKITEDPPRSYNLNKRKPDFENKYGWRVAVDGSQYHPLKSSGIGIYHEYLSAGSMMAPRVNPMATEYGIVVNGSGRVQVLFPNGSNAMDTNITKGDVFFIPSNFPYCEIAHKGESLELLGFTTSAQRNRPVVLVGARSVVRTMEGPELATSFGVSKEEIKHLVSAQHESVILPTP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03439 456 MobiDBLite consensus disorder prediction 242 257 - -
Viun5g03439 456 Gene3D Jelly Rolls 34 218 IPR014710 -
Viun5g03439 456 Pfam Cupin 292 440 IPR006045 -
Viun5g03439 456 Pfam Cupin 56 191 IPR006045 -
Viun5g03439 456 Coils Coil 221 248 - -
Viun5g03439 456 CDD cupin_7S_vicilin-like_C 299 450 - -
Viun5g03439 456 MobiDBLite consensus disorder prediction 233 261 - -
Viun5g03439 456 SMART Cupin_1_3 40 193 IPR006045 -
Viun5g03439 456 SMART Cupin_1_3 292 441 IPR006045 -
Viun5g03439 456 CDD cupin_7S_vicilin-like_N 64 211 - -
Viun5g03439 456 Gene3D Jelly Rolls 283 456 IPR014710 -
Viun5g03439 456 PANTHER OS03G0336100 PROTEIN-RELATED 7 456 - -
Viun5g03439 456 SUPERFAMILY RmlC-like cupins 69 450 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03439 Viun-Chr5 44479411 44481451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03439 71 453 Miscellaneous Gene Families AT2G18540 28.462 1.03e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03439 - - vun:114184045 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03439 5 44479411 44481451 Viun5g03439 5 44479411 44481451 ECH
Viun5g03439 5 44479411 44481451 Viun11g01997 11 35590849 35593512 PCT