Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03342 ATGGCACCATCGTCATCCTCAAGGTTCCTCTACACATGTCTGTCTTTTATGTTTTTCTTTCTCATCTCCAACAACATTCCACCTTCTTTCTCCTCTCCAACTCACCACACAAACAATGACCTTAGTTTTTCTTCAACGGCACAAAAACTCATAAGAGGGCTCAACCTGTTCCCCAAAGACCCCATTAACACACTCCAGAGTGACTCTCTTCTTGTGGCTGGAAACATTGTGGAGAAGAAGTTAACTTTTCATAGCCTAGTTTCTCCAGGGTCTTCTGTGGAAGAACTTGGTCATCATGCAGGCTATTATAGCCTTCCTCGTTCTAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAATCTCGAAACAGAAAGGATGATCCGGTTGTGATATGGTTGACTGGAGGACCAGGATGTAGCAGTGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGCTTACCAAGAACTTGTCCCTTGTGTGGAATGACTATGGTTGGGACAAGGCATCAAATATTATATTTGTTGATCAACCCACTGGAACGGGATTCAGCTATACTTCTGATGAGAGTGACATTCGCCATGATGAAGAGGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGCATTTTTCAAGGAGCACCCTCAGTTTACTAAGAATGACTTTTATATTACTGGAGAGTCATATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAGGGAATTCATATAAATCTAAAGGGATTTGCTATTGGTAATGGGTTAACCAATCCTGAAATTCAGTATCAGGCTTACACAGACTATGCATTAGACAGAGGACTAATTCAAAAGGCTGATTATAATAGCATCAACAAGTTGCTCCCATCATGCAAGCAGGCCATAGAAGATTGCGGCACTGAAGGTGGAGAAACCTGTGTAACTTCCTTATATGTCTGCAATAAGATATTCAATAGGATAATGAACATTGCTGGAGATGTTAATTACTATGACATTAGAAAGAAATGTGTGGGAGATCTGTGTTATGACTTCTCTGAGATGGAGGAATTTTTAAACAAGAAGACAGTGAGAGATGCTTTAGGAGTTGGGGACTTGGACTTCGTTTCATGCAGTAGCACAGTGTATAGTGCTATGATGGAAGACTGGATGAGAAATCTAGAAGCGGGTATTCCCGCACTCCTAGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCAGGCAATGGAGTGGTCTGGTCAAAAAGAATTTGGGGCGTCTGGTGCAGTCCCATTTTTGGTGGATGGTGCAGAAGCAGGCACGCTGAAAAGCCATGGACCTCTCGCTTTCTTGAAGGTATACGAGGCTGGTCACATGGTGCCTATGGATCAACCAAAAGCTGCACTTACAATGCTAAGAAGCTGGATGCAAGGGAAACTGACAATGACAAAGAATGGAGATAACGTCTCTCCTAAATGA 1524 0.4245 MAPSSSSRFLYTCLSFMFFFLISNNIPPSFSSPTHHTNNDLSFSSTAQKLIRGLNLFPKDPINTLQSDSLLVAGNIVEKKLTFHSLVSPGSSVEELGHHAGYYSLPRSKAARMFYFFFESRNRKDDPVVIWLTGGPGCSSELALFYENGPFQLTKNLSLVWNDYGWDKASNIIFVDQPTGTGFSYTSDESDIRHDEEGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDYALDRGLIQKADYNSINKLLPSCKQAIEDCGTEGGETCVTSLYVCNKIFNRIMNIAGDVNYYDIRKKCVGDLCYDFSEMEEFLNKKTVRDALGVGDLDFVSCSSTVYSAMMEDWMRNLEAGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVQAMEWSGQKEFGASGAVPFLVDGAEAGTLKSHGPLAFLKVYEAGHMVPMDQPKAALTMLRSWMQGKLTMTKNGDNVSPK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03342 507 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 94 480 IPR001563 GO:0004185|GO:0006508
Viun5g03342 507 Gene3D alpha/beta hydrolase 76 505 IPR029058 -
Viun5g03342 507 ProSitePatterns Serine carboxypeptidases, serine active site. 224 231 IPR018202 GO:0004185
Viun5g03342 507 Pfam Serine carboxypeptidase 95 493 IPR001563 GO:0004185|GO:0006508
Viun5g03342 507 FunFam Carboxypeptidase 85 503 - -
Viun5g03342 507 SUPERFAMILY alpha/beta-Hydrolases 97 494 IPR029058 -
Viun5g03342 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Viun5g03342 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 210 235 IPR001563 GO:0004185|GO:0006508
Viun5g03342 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 463 476 IPR001563 GO:0004185|GO:0006508
Viun5g03342 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03342 Viun-Chr5 43787925 43791331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03342 K16298 - gmx:100785987 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03342 5 43787925 43791331 Viun5g03342 5 43787925 43791331 ECH
Viun11g01862 11 34555409 34557783 Viun5g03342 5 43787925 43791331 PCT