Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03295 ATGGCTTCTGCGCGATTGGATCTGGACGGAAACCCCATAAAACCAATCACCATCTGTATGATAGGTGCCGGTGGCTTCATTGGGTCTCACCTCTGCGAGAAGCTCATGAATGAAACCCCTCACAAGGTTTTTGCTTTGGATGTTTACAACGACAAGATCAAACACCTTCTCGAACCCGACACGCTCCCCTGGGCTGGTCGCATCCAATTCCACCGCCTCAACATCAAGCACGATTCTCGACTTGAGGGTCTCATCAAGATTGCAGATCTGACCATTAACCTGGCTGCTATATGCACTCCCGCGGATTACAACACTCGCCCTCTCGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGCGAAGTACTGTTCGGAGAACAACAAGCGTCTCATTCACTTCTCTACCTGTGAAGTGTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTGCACTTCGTCAGGATCCTGCATACTACGTGCTGAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCGATTGAAAAGCAGAGATGGTCATATGCCTGTGCTAAGCAGTTGATTGAGAGGCTCATTTATGCTGAGGGCGCTGAAAATGGATTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTGTTCCGCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGTGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTGTATATTAAGGATGCTATTGAAGCTGTTTTGTTGATGATTGAAAATCCTGCGAGGGCCAATGGACACATTTTTAATGTGGGTAACCCAAACAACGAGGTTACGGTTAGGCAGCTTGCTGAAATGATGTCACAGGTTTATTCAAAGGTAAGTGGAGAAGCTCCCCTGGAAAAGCCTACTGTTGATGTGAGCTCCAAAGAATTTTATGGCGAGGGATATGATGACAGCGACAAGAGAATTCCTGACATGACCATAATTAATAGACAACTTGGTTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCAACTCTGACCTATCAGCACAGAACTTACGCTGAAGCCATAAAGAAAGTGATTGCAAAGCCCGTGGCAAGTTAA 1164 0.4691 MASARLDLDGNPIKPITICMIGAGGFIGSHLCEKLMNETPHKVFALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVAKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMSQVYSKVSGEAPLEKPTVDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03295 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 17 372 - -
Viun5g03295 387 Gene3D - 16 378 - -
Viun5g03295 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Viun5g03295 387 FunFam UDP-D-apiose/UDP-D-xylose synthase 2 16 379 - -
Viun5g03295 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Viun5g03295 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03295 Viun-Chr5 43464586 43467583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03295 16 382 Miscellaneous Gene Families AT1G02000 21.337 3.14e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03295 K12449 - gmx:100792879 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03295 5 43464586 43467583 Viun5g03295 5 43464586 43467583 ECH
Viun5g03295 5 43464586 43467583 Viun11g01804 11 34083361 34086180 PCT