Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03236 ATGAAATGCCTCGATTTACATTCACCTCACACACAATTCTTCTTCACAACCCACTTTCCTTTCTTTTTCTTTCTCAACACATTTTCTCCGATGGAGGTGGGAAGTGTTCTTGACTTTCTTCAAAACAAAACCATTTTAATCATTGGAGCAACAGGGTTTATTGCCAAAATTTTTCTGGAGAAGATATTGAGGGTTCAACCCAATGTAAAGAAGATTTTTCTTCTTTTGAGAGCCTCAGATGACAGTTCTGCTACTTATCGATTGCACAATGAGATCATAGCGAAGGACTTGTTCATTGTGCTAAAGGAAAAACTGGGTGCAAATTTTAAGTCCTTCATCTCTGAAAAACTGACTCTGGTGCCTGGGGACATTACCTATGAGGATTTGGGTTTGAAAGATTCAATTCTGAGGGAAGACATCTGCAATCAGACGGATGTTATAGTCAATTTGGCTGCAACTACAAACTTTGATGAAAGGTATGACATAGCTTTGGGTATAAACAGCTTTGGGACGAAGCATGTCATGAACTTTGCTAAACAGTGCACTAAACTGAAAGTGCTTCTTCATGTATCAACAGCCTATGTATGTGGTGAGAGAGGTGGCCTCATACTAGAGGACCCCTATCACTTTGGTGAAACACTAAATGGAGTGTCTGGCCTAGACATCGATGCAGAAAAGACCATTGTGTGTAAAAAATTGGATGAACTAAAAGAACAAGGAGCCACAGAACGTGATGTTAAAATAGCCATGAAGAATCTCGGTATTACCAGAGCAAAGGTGTATGGATGGCCAAACACATACGTGTTCACAAAAGCAGTGGGAGAAATGCTTGTGGAGAAACTCAAAGGAAACCTATCTGTTGTTATTCTGCGACCTACCATTGTCACAAGCACAATGAAAGAACCTTTCCCTGGTTATGCCGAAGGTGTCAGAACCATTGACAGTTTAGCTGTTACTTACGCGAAAGGAAAGCTAACATGTTTCCTTGGAGATATCAATGGAGTTGTGGATGTGGTCCCAGCAGACATGGTGGTGAATGCTATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATCATATACCACGTGGGTTCCTCTGTTAGAAACCCTGTCACATATTTGAATCTCCAAGACTTTGGATTAAAATATTTCACTGCAAAACCATGGATAAACAAAGATGGCACACCAGTCAAAGTTGGCAGAGTCACTGTTCTGACCAGCATGGATAGTTTTCAGAGATATATGTTCCTTCGTTACCTCCTTCCACTAAAGGGACTTGAGCTGGCCAACACTGCACTTTGTCAGTATTTCCGGGGAACATATCTTGAGCTGCATAGGAAGATCCAAGTTGTGATGCGGATGGTTGAACTTTACAGACCCTACATGTTCTTTAAAGGAGTATTTGACGATATGAACACAGAGAAGTTGAGAATGGCAGCAAAAGAAAGTGGGACAGAGACAGATCTGTTTTACTTTGATACAAAAAACATTAATTGGGATGATTACTTTATGAAGACCCATCTTCCTGGCATTGTGAAGTACATTTTCAAGTGA 1563 0.4088 MKCLDLHSPHTQFFFTTHFPFFFFLNTFSPMEVGSVLDFLQNKTILIIGATGFIAKIFLEKILRVQPNVKKIFLLLRASDDSSATYRLHNEIIAKDLFIVLKEKLGANFKSFISEKLTLVPGDITYEDLGLKDSILREDICNQTDVIVNLAATTNFDERYDIALGINSFGTKHVMNFAKQCTKLKVLLHVSTAYVCGERGGLILEDPYHFGETLNGVSGLDIDAEKTIVCKKLDELKEQGATERDVKIAMKNLGITRAKVYGWPNTYVFTKAVGEMLVEKLKGNLSVVILRPTIVTSTMKEPFPGYAEGVRTIDSLAVTYAKGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSVRNPVTYLNLQDFGLKYFTAKPWINKDGTPVKVGRVTVLTSMDSFQRYMFLRYLLPLKGLELANTALCQYFRGTYLELHRKIQVVMRMVELYRPYMFFKGVFDDMNTEKLRMAAKESGTETDLFYFDTKNINWDDYFMKTHLPGIVKYIFK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03236 520 CDD FAR_C 420 519 IPR033640 -
Viun5g03236 520 Pfam Male sterility protein 422 520 IPR033640 -
Viun5g03236 520 Gene3D - 38 401 - -
Viun5g03236 520 Pfam Male sterility protein 48 348 IPR013120 -
Viun5g03236 520 CDD FAR-N_SDR_e 43 391 - -
Viun5g03236 520 PANTHER MALE STERILITY PROTEIN 2-RELATED 36 520 IPR026055 GO:0080019
Viun5g03236 520 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 367 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03236 Viun-Chr5 43087757 43093297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03236 140 519 Acyl Lipid Metabolism Gene Families AT4G33790 58.684 5.55e-173 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03236 K13356 - gmx:100805776 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03236 5 43087757 43093297 Viun5g03236 5 43087757 43093297 ECH
Viun5g03236 5 43087757 43093297 Viun11g01760 11 33610678 33614461 PCT