Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01760 ATGGAGTTTGGAAGTGTTCACAACTTTCTAGACGGAAAAACCATTTTAGTTACGGGTGCAACGGGATTCCTTGCGAAACTTTTGGTGGAGAAGATATTAAGGGTTCAACCAAACATCAAAAAGTTATACCTTCTTCTAAGAGCAGCAGATTCAGAAGAAGCTACAAAACGGCTGCACGATGAGGTTCTGTCGAAGGAGTTGTTCAGGGTGCTACGAGGTATGTGGGGTGCAGATTTTGTCTCCTTCATATCTCAGAAAGTGTTGGCTGTTGGTTGCGATGTTTCTGTTGAGAACTTGGGAATTAAAGACACAAAGCTCAGAGAAATGTTGTTGGCGGAGACGGACATCATAGTAAATGCTGCTGCTACTACCAATTTTTATGAGAGATTGGATGTTGCGATGGGGATTAATACGATGGGTGCTCTTAATATTGTGAACTTCGCCAAGAACTGCAGTAAACTACAAATGCTTCTTCATGTATCCACCGCTTATATATGCGGTGAGCGAAAAGGACTTGTGGCAGAGGAGCCTTTTGCTATGGGCGAGACCCTAAATGGGTCCTCAAAATTAGACATCAACATAGAAAAACTGTTAACTGAAGAAAAATTGAAGGAACTTGAGGCAGAAAATGCCAGTGAAAAAACAATCACATCGGTTATGAAAAACCTTGGAACTATAAGGTCAAATTTACATGGATGGCCAAATGTGTATGCATTTACAAAAGCAATGGGGGAAATGATTTTGTTGAAGATGAAAGGTGATATACCATTGATCATTGCACGCCCCACCATAATACTCAGCACTCACTCTGAACCATTTCCCGGTTGGATTGAAGGTGTGAGAACTGTGGACCTCTTTGTTGTGATGTACGGCAAAGGAAAATTAGGGAGAAGCGTTGGTCGTCGGAGTACAATTATAGACGCGATACCAGCAGACATGGTGATAAACTCCATGATAGTAGCACTGGAAGCTTGTTCAAAGAGTTGTTCAAAGACATTGATTTATCATATTGGTTCTTCACTCAGAAATCCATTCAGAATTTCTGATCTTGAGGACTTGGCCCATCAATACTTTACAAAACATCCTTTGACAGACATGTTTGGAAAACCAGTGGCTTGTTCCAAGAAAGTTTCGTGGATGTCTAGTGTGAGTTCATTTCACAGATACATCAACATTCGATACATGCTACCTCTCAAGGGATTAAACGTGATGAACAAAGTGTGCTGCTACAGTCACGAGGCTTTTTACAGTGAAAGGAAACTGAAAGTGAAAAAGATGATGGGAATAATGAGACTTTATAAACCTTATCTCCTCTTTGAGGGAATCTTCGATGACAAGAACGCAGAAAATTTAAGGATGACAAAAATGAAGGCAAAAGATGACGATGATGTTGGAAGATTTAACTCCGATCCCACAACTATTGATTGGACTCATTATGTGTTAAACGCTCACATTCCTGGACTTGTGAAGTATGGTGTCAAGTAA 1485 0.4047 MEFGSVHNFLDGKTILVTGATGFLAKLLVEKILRVQPNIKKLYLLLRAADSEEATKRLHDEVLSKELFRVLRGMWGADFVSFISQKVLAVGCDVSVENLGIKDTKLREMLLAETDIIVNAAATTNFYERLDVAMGINTMGALNIVNFAKNCSKLQMLLHVSTAYICGERKGLVAEEPFAMGETLNGSSKLDINIEKLLTEEKLKELEAENASEKTITSVMKNLGTIRSNLHGWPNVYAFTKAMGEMILLKMKGDIPLIIARPTIILSTHSEPFPGWIEGVRTVDLFVVMYGKGKLGRSVGRRSTIIDAIPADMVINSMIVALEACSKSCSKTLIYHIGSSLRNPFRISDLEDLAHQYFTKHPLTDMFGKPVACSKKVSWMSSVSSFHRYINIRYMLPLKGLNVMNKVCCYSHEAFYSERKLKVKKMMGIMRLYKPYLLFEGIFDDKNAENLRMTKMKAKDDDDVGRFNSDPTTIDWTHYVLNAHIPGLVKYGVK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01760 494 Pfam Male sterility protein 393 494 IPR033640 -
Viun11g01760 494 CDD FAR_C 392 491 IPR033640 -
Viun11g01760 494 Pfam Male sterility protein 17 318 IPR013120 -
Viun11g01760 494 Coils Coil 189 214 - -
Viun11g01760 494 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 327 IPR036291 -
Viun11g01760 494 CDD FAR-N_SDR_e 13 362 - -
Viun11g01760 494 Gene3D - 6 386 - -
Viun11g01760 494 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 492 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01760 Viun-Chr11 33610678 33614461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01760 1 399 Acyl Lipid Metabolism Gene Families AT5G22500 52.000 3.27e-145 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01760 K13356 - gmx:100793736 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03236 5 43087757 43093297 Viun11g01760 11 33610678 33614461 PCT