Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03183 ATGATTTCACCGCAAACAAAAAAACCCTTGTGTTGGTTCTTCCTTCTTTTCCTCGTCTTGTTGCAGAAGCGATTCCAGATGGGTGTGGTCGACCAAGACTCTTCCCATTCCCAACCCAATCGGATCCTGATCCGTGCGGTCTGGGCCTCCAACCTTGAAGCGGAGTTTCAGATCCTTCGCGGCGTAATCGACGATTACCCTTTTGTTTCCATGGATACTGAATTCCCCGGAGTTATTTACCTCCCCCAAGTGGTGGTTCCGACAGAAACCACCCGCCGCCACCTTAAACCCTCCGAGCACTACGCCTTCCTCAAATCCAACGTTGATGTCCTCAACCTTATCCAGGTGGGTCTCACGCTTTCCGATGCAGACGGTAACCTGCCCCACCTCGGGACCAGCAACCGTTTCATCTGGGAATTTAACTTCCGCGATTTCAACGTGGAGCGTGACTCCCACGCGCCGGACTCAATCGATCTCCTCCGCCGTCAAGGGATCGACTTCGGGCGCAACGCGGCGGAAGGCATCGACTCGTGTCTTTTCGCAGAACTGATGATGTCGTCGGGGTTGGTGTGTAACGAGGCGGTGAGTTGGGTGACGTTTCATAGCGCGTATGATTTCGGGTATTTGGTTAAGATTCTGACCCGACGGAGCCTGCCCCATGGGTTGAAGGATTTCTTGAAAATCTTGAAAGCGTTTTTCGGAGGAAATGTTTATGACATCAAGCACATGATGCGGTTCTGTGACGGCCTGTATGGCGGTTTGGACCGGCTGGCACTAACCCTGAACGTGGACCGGGCCGTTGGAAAGTGTCACCAGGCCGGGTCCGATAGCTTGCTGACGTGGCATGCGTTTAAGAGAATGTGGGATATTTATTTCGCGGAGGGTGGGCCCCAGAAACATGCCGGTGTTTTGTTTGGATTGGAGCTTGCGTATTCCTCTAGTTGA 945 0.5302 MISPQTKKPLCWFFLLFLVLLQKRFQMGVVDQDSSHSQPNRILIRAVWASNLEAEFQILRGVIDDYPFVSMDTEFPGVIYLPQVVVPTETTRRHLKPSEHYAFLKSNVDVLNLIQVGLTLSDADGNLPHLGTSNRFIWEFNFRDFNVERDSHAPDSIDLLRRQGIDFGRNAAEGIDSCLFAELMMSSGLVCNEAVSWVTFHSAYDFGYLVKILTRRSLPHGLKDFLKILKAFFGGNVYDIKHMMRFCDGLYGGLDRLALTLNVDRAVGKCHQAGSDSLLTWHAFKRMWDIYFAEGGPQKHAGVLFGLELAYSSS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03183 314 FunFam Putative CCR4-associated factor 1 7 34 311 - -
Viun5g03183 314 Pfam CAF1 family ribonuclease 47 175 IPR006941 -
Viun5g03183 314 Gene3D - 31 310 IPR036397 GO:0003676
Viun5g03183 314 SUPERFAMILY Ribonuclease H-like 44 306 IPR012337 -
Viun5g03183 314 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 43 308 IPR039637 GO:0004535|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03183 Viun-Chr5 42721186 42722803 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03183 K12581 - gmx:100817875 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03183 5 42721186 42722803 Viun5g03183 5 42721186 42722803 ECH
Viun5g03183 5 42721186 42722803 Viun11g01680 11 33052575 33055097 PCT