Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03126 ATGGGTCGCCGCATCAATGGCGCCTCCGACCTCCGCATATTCTGCACCGTTGTCTTTATTCTCTGTGTTTTCCCTCAGGCATTAACGTTGCGAGAGTCTTCTCCCTCGTCACCGACGGCTCAGATTAACTCCAACTCAATCTTAGTCGCTCTTCTGGACTCGCATTACACTGAACTTGCAGAGCTTGTGGAGAAAGCCATGCTGTTGCAGAAGCTAGAGGAAACTGTGGCGGCACACAACATAACAATCTTCGCTCCGACCAACGAAGCTTTGGACCGGAACCTCGACTCTGATTTCAAGCGCTTCCTTCTCGAACCCGCCAATCTTCACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCACCCGAATCGGATTTCAAACCCTATTCCGCCGCGTCACCACCCTCTCCAACCACCAAATCCGTCTCTCCGAAAACCTCACCACCGTCGACCAGGCCCGCGTCACCCACCCGGATGTCCTCGCCCGACCCGACGGCGTCATACACGCCATCGACCGCCTCCTCCTCCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCACTCTCCGTTCCATCTCCGCCGTCAAACCCGAGGGAGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCTCCCCCGCCGACGAACCCTGGCTCCCCGCCGGCTCTTCCGATCTACGACGCCATGTCTCCGGGACCTTCCCTGGCTCCGGCGCCTGCGCCGGGGCCAGGTGGGCCGCACCACCACTTCAATGGCGAGAAGCAGGTGAAGGATTTCATCCACACGCTCCTCCACTACGGTGGATACAACGAGATGGCGGACATTCTCGTGAATCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTTTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGACGAAGCTATGGCGAAGTTAACGACGGAGCAGTTGAGTGAACCTGGTGCGCCGGAGCGGATAATGTACTATCACATCATACCGGAGTACCAGACTGAAGAGAGCATGTACAATGCGGTTCGAAGGTTCGGGAAGGTTCGTTACGATACTCTGCGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCGTATTTGTTCGACCCGGATATTTACACGGATGGTCGGATCTCAGTGCAGGGTATTGATGGGGTTTTGTTTCCGATGGAAGAGGAAGAGGAGGCGGAGCGGGTTAAAACCGCTACCCAGTCGGGTCAACCCGCTGCAAAAGTTGTTGTCAAGCACAGGAGAGGAAAATTACTTGAAGCAGCATGCTGGATGCTTGGAACCTTTGGACAACATTCTAGATTCACCTCTTGTCAATGA 1377 0.5621 MGRRINGASDLRIFCTVVFILCVFPQALTLRESSPSSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEETVAAHNITIFAPTNEALDRNLDSDFKRFLLEPANLHSLQTLLLSHIIPTRIGFQTLFRRVTTLSNHQIRLSENLTTVDQARVTHPDVLARPDGVIHAIDRLLLPRSVEDDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPTNPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYILTVLAPNDEAMAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPMEEEEEAERVKTATQSGQPAAKVVVKHRRGKLLEAACWMLGTFGQHSRFTSCQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03126 458 MobiDBLite consensus disorder prediction 192 256 - -
Viun5g03126 458 Pfam Fasciclin domain 299 405 IPR000782 -
Viun5g03126 458 Pfam Fasciclin domain 55 178 IPR000782 -
Viun5g03126 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 16 455 IPR044654 -
Viun5g03126 458 Gene3D FAS1 domain 25 179 IPR036378 -
Viun5g03126 458 SUPERFAMILY FAS1 domain 239 406 IPR036378 -
Viun5g03126 458 ProSiteProfiles FAS1/BIgH3 domain profile. 43 176 IPR000782 -
Viun5g03126 458 Gene3D FAS1 domain 284 405 IPR036378 -
Viun5g03126 458 SUPERFAMILY FAS1 domain 44 179 IPR036378 -
Viun5g03126 458 SMART fasc_3 301 406 IPR000782 -
Viun5g03126 458 SMART fasc_3 82 179 IPR000782 -
Viun5g03126 458 FunFam Fasciclin-like arabinogalactan protein 16 255 406 - -
Viun5g03126 458 MobiDBLite consensus disorder prediction 214 231 - -
Viun5g03126 458 ProSiteProfiles FAS1/BIgH3 domain profile. 260 388 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03126 Viun-Chr5 42350630 42354193 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03126 - - gmx:100815434 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03126 5 42350630 42354193 Viun11g01634 11 32610325 32613757 PCT