Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01634 ATGGATTGCCGCATCTATGGCGTCACGATCCTTCTCTTCTTCCTCCCAACCCTCGCATTCTCTCTCTCACAAGGTCAAATAAACTCAAACTCAATCCTCGTGGCTCTGTTGGACTCACATTACACTGAAGTTGCTGAGCTGGTGGAAAAAGCCATGCTTCTTCAAACGCTAGAAAACACGGTAATGAACCACAACATCACAATCTTCGCACCCAGAAACGAAGCTCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTCGAACCCCGCAACCTCCAGTCTCTCCAAACCCTTCTCATGTCCCACATCGTCCCCAAAAGAATCACAAAACCCGAATACCAACCCGGGTTAAGTCACCCAGCTCGACCCACCCGACACAAAACCCTAGCCCCGAATCACCACCTCTCTCTCCAGACCGTTAATTCCACTCACTGGAACGTCGACTCTTCCCGCGTCACCCACCCGGATTCCCTGACCCGACCCGACGGCGTCATCCACGGCATCGACACGCTCATCATCCCTCGTTCCGTACAAGACGACTTCAACCGCCGCCGCAACCTCATCTCCATCGCCGCCGTGAAACCCGAATCCGCTCCGGAGGTCGACCCGCGCACCCATCGCTTGAAAAAACCAGCTCCCCCGACGCCGGCAGGCTCCCCACCTGTGCTGCCGATCTACGACGCGATGGCGCCGGGACCCTCACTGGCGCCGGCGCCGGCGCCTGGACCGGGTGGACCCCACCATCACTTCAATGGAGAGAGACAGGTGAAAGACTTCATCCAAACGCTCCTCCACTACGGTGGTTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCACTGGCGACGGAAATGGGACGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAACGACGAAGCGATGGCGAAGTTAACGACGGACCAGCTGAGTGAACCGGGTTCGCCTGAACAGATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGTAAGATCCGTTACGACACGTTACGGTTGCCTCATAAGGTGACGGCGCAGGAGGCTGACGGCTCCGTCAAGTTCGGTCACGGCGACGGGTCGGCGTATTTGTTCGACCCGGATATTTACACGGATGGACGGATCTCCGTTCAGGGAATCGACGGCGTTCTGCTTCCGCCTCAGGAGGAAGAGGCTGGGCCTGTGACCCGGGCCCAACCCGCTAAGGTCGTCGTTAAGCAAAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGTCAGGATTCAAGATTCATCTCTTGTCAATAA 1353 0.5514 MDCRIYGVTILLFFLPTLAFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPEYQPGLSHPARPTRHKTLAPNHHLSLQTVNSTHWNVDSSRVTHPDSLTRPDGVIHGIDTLIIPRSVQDDFNRRRNLISIAAVKPESAPEVDPRTHRLKKPAPPTPAGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKIRYDTLRLPHKVTAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLLPPQEEEAGPVTRAQPAKVVVKQRRGKLLETACWMLGSFGQDSRFISCQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01634 450 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 22 442 IPR044654 -
Viun11g01634 450 Pfam Fasciclin domain 40 176 IPR000782 -
Viun11g01634 450 Pfam Fasciclin domain 283 403 IPR000782 -
Viun11g01634 450 SMART fasc_3 67 177 IPR000782 -
Viun11g01634 450 SMART fasc_3 299 404 IPR000782 -
Viun11g01634 450 FunFam Fasciclin-like arabinogalactan protein 16 253 404 - -
Viun11g01634 450 Gene3D FAS1 domain 33 176 IPR036378 -
Viun11g01634 450 Gene3D FAS1 domain 251 404 IPR036378 -
Viun11g01634 450 MobiDBLite consensus disorder prediction 197 254 - -
Viun11g01634 450 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
Viun11g01634 450 ProSiteProfiles FAS1/BIgH3 domain profile. 258 386 IPR000782 -
Viun11g01634 450 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Viun11g01634 450 SUPERFAMILY FAS1 domain 31 177 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01634 Viun-Chr11 32610325 32613757 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01634 - - gmx:100790599 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03126 5 42350630 42354193 Viun11g01634 11 32610325 32613757 PCT