Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03117 ATGGCGGAAACCTTAAGCCCTAATCCAACCATGGCCCACAAAAAGAGGGTTCCCATGTCCGCTCGTATGCAGTCTCCGACAAGTCCCTTCTTCGTGGGCTCCAACGACGACCAGCTCGAACGGGCCCAGGCTCGTGCGGCCCGCGCCGCCGCCATCCGCCACAAGTCCCTTGCCGTCAACTTCCATCCGCACCCTCCCAAGTCTCCTTCCTGTCTCAACGAGCACCAGATTCTCGACTTGTTCCACAACTGCATAAAGCTCGCTTCCGAAAATAAAATTAATCAGAAAAACACGTGGGAGTTGGATTTGATCGATCACCTCACCGATATTATTAGGGTTGAAGAAGGGAATCACGTGGAGACTAATTTTCAAATAGCAAGCTGTACTCTTGAAGCTGGAGTCAGAATATATTCCTTGAGGGTGGATTCGGTGCATTCGGATGCATATAAAGTCCTTGCTGGAATGAATAGAGTAGGCCAAGATACCGAGGAAGGTGCTACTTTAGGGAGTGTTAATGCTGAAAATGGAGAGGCAAGCAGGAAGGAAGTTGGCAAAAAGTTGTCGCATTTGTCAACATTGGAATCATCTTTTGAGGTTCTTAATGTAAAGAAGTTTGACGTTGCATTTGCAGTGGATCCACTCTATCACCATACATCAGCACAATTTGATGAAGGTGGAGCCAAAGGCCTTTTGATGAATAATCTTGGTGTATATGGTAAATGTAGGGTGCTCTTTGATTCACTAGAAGTGCCGGCGAAGTGCCTAACCAGTCAAAATGATCATGATATTTCAGATACAATTGATCTTTCTTTCGCCAGAGATTGTGTTGAACAGATGATATTGAATATGCATACGAAGGATGTAATCTCTCCAACTCTCAGGATAATAGTAAACCAATTTGATGAAAATGATGGAAGGCCTTTTTATTTTCAATCTTCCGGCGAGAAATCAGCTGAAGAGTTTGATGCCGCTATTGATTCTGAACTTGCCAATGGAAAAGAAGGATATGAGATCTGCTCATCTTGGAGTTATGATCACGATAGCCAAACATTTGCTGCTGAATGGGGCTTTAGTGACGCAGACCCTAGTTTTCCAAGTTACCATGAGGAAAAGGAACCTAATGTGGATGACATATTTGACAACGTTGATGGATATTTATTTTTGAGTCTGGGTTTTAGGTCAAAGAAAAACTCATGGGCAGGCCCCGATCATTGGAAATATCAAAAAGTTCAAGAAGGCTCTAAGTCAAAGGTTCCTTGTACTTCCGAGGATGAGTTGATCCAGAAAACCAGGCAGCCAAGGACAAAGAGAGAGGTCAAAGTTGATTTAGAATTCACAAGTTTTCTGGAGAAAAAAATACCTGATATCTTTTCTCCTCCCAAGAATCCCAAATCATTACTGGTCTCAGAAAATATATCACCTTGCGTTACAAAACTTCCAGAGGACTGGCACTACGAACCAGAGAATCTTGTCAATTTATTTCTTTTGCCTCATGTAAAGTGTATTAGGAGGAGAGCGAGAAAGGTACCAGATGTCTTAGAAGAACAATGCTATTATAACGAATCATTCCCTTCTTGGGATAATGGAAGTGTTTGTGATGGTGATGTTACTGATGTAAATAATGACACGGATGACTCTAGCACACTTGTTGCTCAGCCTCGTCAAATCAATAAAATTGAAGTCCAGTATGACAAAACATCCAAACAAGTCAATGTGCAGGCTCTGAAAATAACACTTTGGGACCATATTCAAGAATCTATTCAACTTCCATTTCAGGGTCAGAAAGAAAAGGTATCTTTCAGGCATATATTGACAAACTTTCCAAGTAAGTGCAATGCTGCTGCAACTATTAGTGACATATCTCCACATTTGTGTTTCATATGCCTATTACATTTGGCTAATGAGAAGGGTTTGAGCATCCAAAGTTGCCCTAACTTGGATGATCTTGGTATATGCTTACTTGATGATGGTGCCAGAACAATTTAG 1986 0.4189 MAETLSPNPTMAHKKRVPMSARMQSPTSPFFVGSNDDQLERAQARAARAAAIRHKSLAVNFHPHPPKSPSCLNEHQILDLFHNCIKLASENKINQKNTWELDLIDHLTDIIRVEEGNHVETNFQIASCTLEAGVRIYSLRVDSVHSDAYKVLAGMNRVGQDTEEGATLGSVNAENGEASRKEVGKKLSHLSTLESSFEVLNVKKFDVAFAVDPLYHHTSAQFDEGGAKGLLMNNLGVYGKCRVLFDSLEVPAKCLTSQNDHDISDTIDLSFARDCVEQMILNMHTKDVISPTLRIIVNQFDENDGRPFYFQSSGEKSAEEFDAAIDSELANGKEGYEICSSWSYDHDSQTFAAEWGFSDADPSFPSYHEEKEPNVDDIFDNVDGYLFLSLGFRSKKNSWAGPDHWKYQKVQEGSKSKVPCTSEDELIQKTRQPRTKREVKVDLEFTSFLEKKIPDIFSPPKNPKSLLVSENISPCVTKLPEDWHYEPENLVNLFLLPHVKCIRRRARKVPDVLEEQCYYNESFPSWDNGSVCDGDVTDVNNDTDDSSTLVAQPRQINKIEVQYDKTSKQVNVQALKITLWDHIQESIQLPFQGQKEKVSFRHILTNFPSKCNAAATISDISPHLCFICLLHLANEKGLSIQSCPNLDDLGICLLDDGARTI 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03117 661 PIRSF Condensin_H 272 547 IPR022816 GO:0000796|GO:0007076
Viun5g03117 661 PIRSF Condensin_H 1 274 IPR022816 GO:0000796|GO:0007076
Viun5g03117 661 PIRSF Condensin_H 511 656 IPR022816 GO:0000796|GO:0007076
Viun5g03117 661 Pfam Condensin complex subunit 2 25 515 IPR022816 GO:0000796|GO:0007076
Viun5g03117 661 Pfam Condensin complex subunit 2 537 651 IPR022816 GO:0000796|GO:0007076
Viun5g03117 661 MobiDBLite consensus disorder prediction 1 23 - -
Viun5g03117 661 PANTHER CONDENSIN COMPLEX SUBUNIT 2 14 653 IPR022816 GO:0000796|GO:0007076
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03117 Viun-Chr5 42296892 42301178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03117 K06676 - gmx:100777082 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03117 5 42296892 42301178 Viun5g03117 5 42296892 42301178 ECH
Viun5g03117 5 42296892 42301178 Viun11g01627 11 32567539 32572660 PCT