Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03038 ATGTCTTCATCGATAGTCATGGCAATTACACAGCCTAGAGTTTCATCTTTTACATCCTCATTTGCTTATCGCAGTTCGCAACCATTCATGAATCAACTGCGCAACCTATCCTGCAAAACATCAACACCAACAACAGTCATGCAATTATCCATCAACTCCATCGCTCTCTCTCAAAAGGTACCTACTCAAACTATTCCTACGATAACAAGTTTGGAGCAACTAAAAATAAAAAGCCAAGAGGTATTACTAGACTCAAGTGATTCATTGAGAACATTGAAGTTGATTGACACCATCCAAAGGCTAGGAATTGAGCACCATTTCGAAGAAGAGATCAACTTTCAACTTGGAAGAGTGGGAGATTGTAACAATGCCGAAGACCTCTCTGCCACAGCTCTTCAATTTCGCTTGCTAAGACATAATGGTTGGTCTACATCTTCAGATGTTTTCAATAAATTTTTGGACAAGAGTGGAAATTTCAAGGAATCAGTCACCAGAGATGTTTGGGGCATGTTGAGTTTGTATGAGGCATCATATTTAGGTGCAAAAGAGGAAGAAGTACTACAATATGCCATGGAGTTCTCAAGTGCTCATCTACACCAGTCACTACCACACCTAAGTCCTGAAGAAGGAAGAGTAGTTGTCGAAGCCTTAAAACTTCCAAGACACCAAAGAATGAGAAGATTGGAAGCAAAAAATTACATGGTGCAATATAGCAAAGAAAGTAGCCAAATTCCTTCTCTTCTAGAATTGGCAAGGCTAGACTATGACATGGTTCAGTCAATGCACCAGAAAGAATTAGCAGAGATCTCAAGGTGGTGGAAAGACTTGGGACTTATCGAAAGACTCGGTTTTGGAAGAGATGGACCAAGAGAGTGCTTCCTATGGGCGTTGGGAGTTTTTCCAGAACCACGTCATTCAAATTGTCGTATTGAATTGGCAAAAGCCATTTGCATTTTGCAAGTTATAGATGATATGTTCGACACATACGGAACATTAGATGAACTTATTCTTTTCACCGAGGCAGTGCAAAGGTGGGATCTTGATGCAATGGAGAAACTACCTGAATATATGAAGATATGTTACATGGCCTTGTATAACACCACCCATGAGATTGCATATAGAATTCAGAGGGATCATGGGCAAACCGTTGTTGCTTGCTTGAAAAGAACATGGATAGACTTACTTGAAGCTTATCTAGTAGAAGCTAAATGGTTCAACAACAGATACGTTCCTGCTTTTGGGGAATATTTGGATAATGGGGTGATTTCTTCAGGATCATGCTTGGCCTTAGTACATGCAACTGTCCTCATTGGGGAAAACCTCTCAAGAGAAACCATTTCCATGATGACTCCATATCCAAGACTCTTCACTTGTTCTGGAGAAATTCTTAGGCTTTGGGATGACTTAGGAACCTCAAAGGAGGAACAAGAAAGAGGTGATAATGCATGTAGCATACAATGTCTCATGAAAGAAAATGATGTTTTAGATGAAACTTTTGCTAGAAAAGATATAAGGAAACTGCTGGGAAACTTATGGCCTGAGCTAAATGGTCTTGCTATGGCCACAACCACTCTACCTTCTGCTGTTACGAAAGCTTCTTTCGACATGGCTAGAACTTCTCAGTTTATTTATCAACATGGCGATGATCAAAGGATGCCTACAGTTGATGATCTAGTACAAGCATTGTTGTTTACACCTTCTGACAAATACAGGGAAGAAAGTGATATCATTTGTGTTGTATGA 1743 0.3993 MSSSIVMAITQPRVSSFTSSFAYRSSQPFMNQLRNLSCKTSTPTTVMQLSINSIALSQKVPTQTIPTITSLEQLKIKSQEVLLDSSDSLRTLKLIDTIQRLGIEHHFEEEINFQLGRVGDCNNAEDLSATALQFRLLRHNGWSTSSDVFNKFLDKSGNFKESVTRDVWGMLSLYEASYLGAKEEEVLQYAMEFSSAHLHQSLPHLSPEEGRVVVEALKLPRHQRMRRLEAKNYMVQYSKESSQIPSLLELARLDYDMVQSMHQKELAEISRWWKDLGLIERLGFGRDGPRECFLWALGVFPEPRHSNCRIELAKAICILQVIDDMFDTYGTLDELILFTEAVQRWDLDAMEKLPEYMKICYMALYNTTHEIAYRIQRDHGQTVVACLKRTWIDLLEAYLVEAKWFNNRYVPAFGEYLDNGVISSGSCLALVHATVLIGENLSRETISMMTPYPRLFTCSGEILRLWDDLGTSKEEQERGDNACSIQCLMKENDVLDETFARKDIRKLLGNLWPELNGLAMATTTLPSAVTKASFDMARTSQFIYQHGDDQRMPTVDDLVQALLFTPSDKYREESDIICVV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03038 580 Pfam Terpene synthase, N-terminal domain 61 203 IPR001906 GO:0010333|GO:0016829
Viun5g03038 580 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 70 242 IPR008930 -
Viun5g03038 580 PANTHER OS04G0344100 PROTEIN-RELATED 78 550 - -
Viun5g03038 580 SUPERFAMILY Terpenoid synthases 245 566 IPR008949 -
Viun5g03038 580 CDD Terpene_cyclase_plant_C1 71 566 IPR044814 GO:0010333|GO:0016102
Viun5g03038 580 Pfam Terpene synthase family, metal binding domain 248 512 IPR005630 GO:0000287|GO:0010333|GO:0016829
Viun5g03038 580 SFLD Terpene Cyclase Like 1 C Terminal Domain 246 566 IPR034741 -
Viun5g03038 580 Gene3D - 87 243 IPR036965 GO:0010333|GO:0016829
Viun5g03038 580 Gene3D Farnesyl Diphosphate Synthase 69 551 IPR008949 -
Viun5g03038 580 FunFam Isoprene synthase, chloroplastic 215 555 - -
Viun5g03038 580 SFLD Isoprenoid Synthase Type I 246 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03038 Viun-Chr5 41558738 41565237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03038 - - gmx:100806124 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03038 5 41558738 41565237 Viun5g03038 5 41558738 41565237 ECH
Viun5g03038 5 41558738 41565237 Viun11g01549 11 31762130 31768141 PCT