Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03037 ATGTCCAAGATGTTGGGACTTTTTGTTGGTCTTTTGTTGCTGGGTTTGGCTGCTTCTGTCAAGTTTGATGAACTCTTCCAACCCGGTTGGGCCATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCCAAGAGCAAGTACATGTTTGGGAAAGTGGCCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCCGGAACTGTTACTGCATTTTATATGTCATCAGACGGTCCAACTCACAACGAGTTTGATTTCGAGTTTCTGGGCAACACCAGTGGGGAACCTTACTCGGTGCAAACCAACGTGTACGTGAACGGTGTTGGTAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATTTTCTGGAACCAGCGCCAAGTTGTATTCGAAGTGGATGGGACGCCAATAAGGGTGCATACAAATCTGGAACACAAGGGAATTCCGTTCCCAAAGGACCAAGCCATGGGTGTATACAGTTCAATATGGAACGCAGATGACTGGGCCACACAGGGTGGTCGCGTGAAGACAGATTGGAGCCACGCACCGTTCTTTGCGACCTACAAGGACTTTGAAATCGACGCCTGTGAGTGTCCGGTGCCGGTGACGTCAGCTGGTTCTGCCAACAAATGTAACAGCAGTGAGGATAAGAAGTATTGGTGGGACGAACCCACAATGTCGGAACTGAACCTGCATCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTACTGCACCGACACTGCTAGGTTCCCGGTCACACCTGCTGAGTGTCTCCATCATCGTCACCACTGA 870 0.5 MSKMLGLFVGLLLLGLAASVKFDELFQPGWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVAIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTSGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFEVDGTPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFFATYKDFEIDACECPVPVTSAGSANKCNSSEDKKYWWDEPTMSELNLHQSHQLMWVRANHMVYDYCTDTARFPVTPAECLHHRHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03037 289 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Viun5g03037 289 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Viun5g03037 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
Viun5g03037 289 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Viun5g03037 289 PIRSF EndGlu_transf 2 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Viun5g03037 289 Gene3D - 14 289 - -
Viun5g03037 289 Pfam Glycosyl hydrolases family 16 26 200 IPR000757 GO:0004553|GO:0005975
Viun5g03037 289 FunFam Xyloglucan endotransglucosylase/hydrolase 10 285 - -
Viun5g03037 289 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 19 283 IPR044791 GO:0004553
Viun5g03037 289 PRINTS Glycosyl hydrolase family 16 signature 110 123 IPR008264 GO:0004553|GO:0005975
Viun5g03037 289 PRINTS Glycosyl hydrolase family 16 signature 128 145 IPR008264 GO:0004553|GO:0005975
Viun5g03037 289 PRINTS Glycosyl hydrolase family 16 signature 52 70 IPR008264 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03037 Viun-Chr5 41548388 41550508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03037 52 288 Glycoside Hydrolase AT4G03210 78.059 1.71e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03037 K08235 - gmx:100801567 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01551 11 31835876 31837877 Viun5g03037 5 41548388 41550508 PCT