Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01551 ATGTCTCACTCCTTAGGATTGTTTGTGGGTCTTATGTTGCTTGTGGGGGTGGCTTCCACCTCCAACTTCGACCAACTTTTCCAACCTAGTTGGGCTTTTGATCACTTCGTCCATGAAGGAGATCTCCTCAAACTCAAACTTGACAATTATTCCGGGGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTCGTGGAAGGTGACTCAGCTGGGACTGTCACTGCTTTCTATATGTCGTCGGAGGGGCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGAAACACCACAGGGGAACCATACTCAGTCCAAACAAACGTGTATGTGAACGGAGTGGGCAACAGAGAACAAAGGCTCAACCTTTGGTTCGACCCTACCAAGGATTTCCACTCGTACTCCATCTTCTGGAACCAACGACAAGTTGTGTTTTTGGTGGATGAAACGCCGATAAGAGTGCACACGAACATGGAGCACAAGGGTATTCCTTATCCGAAAGACCAAGCCATGGGTGTGTACAGTTCTATATGGAATGCCGACGATTGGGCGACCCAGGGTGGTCGTGTGAAGACGGATTGGAGCCACGCGCCGTTCTTTGCGACCTTCAAGAACTTTGAGATCAATGCTTGTGAGTGCCCTGTGTCAGTGGCTGCAATGGATAACTCCAAACGGTGCAGCAGCAGTGAGGGTAAGAAGTATTGGTGGGACGAGCCAAATCTGGCTGAACTCAACGTGCACCAGAGCCATCAGCTGAAGTGGGTTAGGGCCAGACACATCTTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTTACGCCAGCAGAGTGTGTTCATCACCGTCACAACTAG 873 0.4914 MSHSLGLFVGLMLLVGVASTSNFDQLFQPSWAFDHFVHEGDLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPYPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFFATFKNFEINACECPVSVAAMDNSKRCSSSEGKKYWWDEPNLAELNVHQSHQLKWVRARHIFYDYCSDTARFPVTPAECVHHRHN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01551 290 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 284 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Viun11g01551 290 PIRSF EndGlu_transf 2 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Viun11g01551 290 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 209 IPR000757 GO:0004553|GO:0005975
Viun11g01551 290 Pfam Glycosyl hydrolases family 16 26 201 IPR000757 GO:0004553|GO:0005975
Viun11g01551 290 FunFam Xyloglucan endotransglucosylase/hydrolase 10 286 - -
Viun11g01551 290 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 288 IPR013320 -
Viun11g01551 290 Gene3D - 12 290 - -
Viun11g01551 290 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 20 284 IPR044791 GO:0004553
Viun11g01551 290 PRINTS Glycosyl hydrolase family 16 signature 111 124 IPR008264 GO:0004553|GO:0005975
Viun11g01551 290 PRINTS Glycosyl hydrolase family 16 signature 129 146 IPR008264 GO:0004553|GO:0005975
Viun11g01551 290 PRINTS Glycosyl hydrolase family 16 signature 53 71 IPR008264 GO:0004553|GO:0005975
Viun11g01551 290 CDD GH16_XET 18 284 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01551 Viun-Chr11 31835876 31837877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01551 53 289 Glycoside Hydrolase AT4G03210 73.418 7.25e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01551 K08235 - gmx:100785982 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01551 11 31835876 31837877 Viun5g03037 5 41548388 41550508 PCT