Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03034 ATGTTTGGTGCCACACTCCGAAACTCGATAGCTATTGATTCTGCAGCCATGCCTGAGGCTCCGAAGCACTTCTGCAACGAGCCAAAGGAGCTTGACGATGGTGGCAGTAACAGTAGCATCATCATGGAGAATAAGAGGGCCCTGGAATACATTGAAGAGGTCACCAGAAACGCTGATGAAATTCAAGAAAAGGTGCTTGCACAGATCCTTTCTTGTAGTGCAGAAACTGAGTACCTCCGACGCCATGGCCTAGACGCTCGCACTGACAGAATCACTTTCAAAAAGCTCGTCCCAGTCGTCACTTACGAGGATTTAAAGCCTCATATTGATCGCATAGCCAACGGTGACACCTCCCCAATTTTATGTTCCAAACCCATCTCAGAATTTCTCACTAGCTCTGGAACGTCTGGTGGGGAGAGAAAGCTGATGCCTACAATCGAAGAGGAACAAGAGAGAAGATCATTGCTTTATAGCTTGTTGATGCCGGTGATGGATCAGTTCGTGCCTGGTTTGGAGAAGGGAAAAGGCATGTACTTTCTCTTCACAAAATCAGAAGCCAAGACTCCCTCTGGACTCCTTGCTCGTCCAGTTCTCACCAGCTATTACAATAGCTCACAGTTCATACACCGCAAACCCGATCCCTACGCAAACTACACCAGCCCAAACGAAACCATTCTCTGCCCTCACTCTTACCAAAGCATGTACTCTCAGTTGCTCTGTGGCCTTTTCCAGAACGAGGAAGTTCTTCGCGTTGGCGCAGTCTTCGCCTCCGGTTTTATCCGTGCCCTTAAGTTCCTCGAAAAGCACTTCCGTTGTCTCTGCAATGACATAAGAACGGGCACCCTAGACACCAAAATCACTGACCCATCTGTGAGAGAAGCTGTGATGAAAGTGCTGAAACCAAATCCCACGCTTGCGGATTTCATTGAAGCCGAATGTTTGAAGGGGTCGTGGAAGGGAATCATTACCAGGATATGGCCTAACACCAAGTATGTTGATGTTATTGTCACGGGAACCATGTCTCAGTATATTCCCATATTGGATTATTATAGCAATGGTCTTCCTCTTGTGTGCACCATGTACGCTTCTTCTGAGTGCTACTTTGGCCTGAATTTGAACCCCTTGTGTCACCCAACTGAGGTCTCTTACACACTCATTCCCACCATGGCCTACTTTGAATTCCTGCCCGTGGATCACATCAATGGACATACTGATTCCATTTCTAACCTAGACCATGAACATTTGGTAGATCTTGTTGATGTCAAGATGAATCAAGAGTATGAGCTTGTGGTCACCACTTATGCAGGACTTTATAGGTACCGGGTTGGCGACATCCTCCGTGTAGCTGGATTCAAGAACAAGGCTCCTCAGTTCAACTTCGTGTGTCGAAAGAACGTGGTTCTCAGCATTGATTCTGATAAAACCGACGAAGTTGAGCTCCACAATGCTGTCAAAACTGGTGCTGATCATCTTCCACAATTTGGTGCATCTCTCACTGAATACACCAGTTGCGTGGACACGTCAACAATTCCAGGCCACTACGTTGTCTACTGGGAAATCAACACAAATGGGGAAACCCCAGCAATTCCTTCTTCTGTTTTTTGTGATTGTTGCTTCGCAATTGAAGAATCTCTGAGCAGCGTGTACCGGCAGGGCAGGGTATCGGAGTGTATTGGAGCCTTGGAAATCAGGGTGGTTGAGAATGGCACGTTTGACAAACTCATGGACTTTGCTCTTAGCCAAGGTGCCTCCATAAACCAATACAAGACACCTCGTTGCGTCACTTACGTGCCCATTATCGACCTTCTTAACTCCAAAGTTGTTTCCAATTACTTCAGTCCCAAATGCCCAAGTTGGGTCCCTGGTCACAAGAATTGGTTCATTGAAAATTAG 1893 0.4675 MFGATLRNSIAIDSAAMPEAPKHFCNEPKELDDGGSNSSIIMENKRALEYIEEVTRNADEIQEKVLAQILSCSAETEYLRRHGLDARTDRITFKKLVPVVTYEDLKPHIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEEQERRSLLYSLLMPVMDQFVPGLEKGKGMYFLFTKSEAKTPSGLLARPVLTSYYNSSQFIHRKPDPYANYTSPNETILCPHSYQSMYSQLLCGLFQNEEVLRVGAVFASGFIRALKFLEKHFRCLCNDIRTGTLDTKITDPSVREAVMKVLKPNPTLADFIEAECLKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCHPTEVSYTLIPTMAYFEFLPVDHINGHTDSISNLDHEHLVDLVDVKMNQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELHNAVKTGADHLPQFGASLTEYTSCVDTSTIPGHYVVYWEINTNGETPAIPSSVFCDCCFAIEESLSSVYRQGRVSECIGALEIRVVENGTFDKLMDFALSQGASINQYKTPRCVTYVPIIDLLNSKVVSNYFSPKCPSWVPGHKNWFIEN 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03034 630 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 42 616 IPR004993 -
Viun5g03034 630 Pfam GH3 auxin-responsive promoter 51 595 IPR004993 -
Viun5g03034 630 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03034 Viun-Chr5 41526285 41530318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03034 48 613 EF-hand Containing Proteins AT1G23160 49.217 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03034 K14487 - gmx:100818961 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03034 5 41526285 41530318 Viun5g03034 5 41526285 41530318 ECH
Viun5g03034 5 41526285 41530318 Viun11g01534 11 31568645 31571732 PCT