Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02989 ATGGCGGCTCTCACTTCTCTCTCTTTCTCTGCGGTCACTCACTGCCCGGAAAGAAAAAAACTAACCTTTTCCCCCACTCGTTTTCTCGCCACCTCTTCAGATTTCTTTGGCCTCCGCACCCATTTCTCTTACCACCATGTTGGCGTTCGAGCTTCCAACTCCACTTCTAACATGGTTGTTCAATGCATGTCTTCTGTCGCAGATGCTCCCACTGTTTCGGAGACAAAGTTGAATTTCCTGAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACAGTGCTGCAGGAGCTAATTGTGCAGCAACATTTAATGAGATACAAGAGATCATACCGCTATGACCCTGTATTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAAGGTTATCCCAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATTAACGCATTGAAGGAAGATCCACAACAATACAGAATAGATGCAAGGAAGTTGGAAGAGTGGGCTCGGGTTCAAAACCCAAGTTCCCTTCTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAAGGGATTTTAAAGGACATAGCAGAAAGAGCAGCGGGGAAAGGTGAATTCAGTTATAATCGTTTCTTTGCAGTTGGACTTTTTCGTCTGCTTGAGTTGGCAAATGCTACGGAACCAACAATTTTGGACAAGCTTTGTGCGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGACGTGTATCGTAACCTGCTCTCAAAGTTGGTTCAAGCAAAAGAACTGCTGAAGGAGTATGTTGACAGGGAAAAGAAGAAAAGGGATGAAAGGGCTGAAACACAAAAGGCTAATGAGGCCATCACAAAATGTTTGGGTGAACAACTTCCAGGCCTGTAG 894 0.443 MAALTSLSFSAVTHCPERKKLTFSPTRFLATSSDFFGLRTHFSYHHVGVRASNSTSNMVVQCMSSVADAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYINALKEDPQQYRIDARKLEEWARVQNPSSLLEFSSKEGEVEGILKDIAERAAGKGEFSYNRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAETQKANEAITKCLGEQLPGL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02989 297 NCBIfam photosystem II biogenesis protein Psp29 68 273 IPR017499 GO:0010207|GO:0015979
Viun5g02989 297 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 293 IPR017499 GO:0010207|GO:0015979
Viun5g02989 297 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Viun5g02989 297 Coils Coil 248 278 - -
Viun5g02989 297 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02989 Viun-Chr5 41126277 41128733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02989 - - gmx:100814341 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02989 5 41126277 41128733 Viun5g02989 5 41126277 41128733 ECH
Viun5g02989 5 41126277 41128733 Viun11g01498 11 31182806 31188595 PCT