Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01498 ATGGCCACTGTTACTTCTTCCTTCCATTTCTCTACTCTCACTCAATCTTCTCAGAGGAACTTCACCCTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTCGTTTCTCATGCCACTATCTTGGAGTTCGAGCTTCCAGTTATGCTTCCAAAATGGTTGTTCGCTGCTCCTCTTCCTCTGTCACAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGAATATAAGCGACCAATTCCTAGTATCTACAACACGGTGCTGCAAGAGCTCATTGTTCAGCAACATTTAATGAGATACAAGAGATCATATCGCTATGACGCTGTATTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGCTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTAAGGCACTGAAAGAAGATCCTGAACAATACAGAGTTGATGCAAAGAAATTGGAAGAATGGGCTAGAGCTCAAAACCCAACCTCACTAGTTGAGTTCTCATCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTTGCAATAGGCCTATTTCGCCTTCTTGAGTTAGCAAATGCTATGGAACCAACAATTTTGGAAAAGCTTTGTGCGGTTTTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGATGTGTATCGGAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGTTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGACTAATGAGGCCATTACACAACAACAATTTTCTAGCCTTTAG 870 0.4218 MATVTSSFHFSTLTQSSQRNFTLSSNSPTFRFRVRFSCHYLGVRASSYASKMVVRCSSSSVTDPPTVSETKLNFLKEYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIKALKEDPEQYRVDAKKLEEWARAQNPTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKTNEAITQQQFSSL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01498 289 Coils Coil 243 273 - -
Viun11g01498 289 Hamap Protein Thf1 [thf1]. 61 269 IPR017499 GO:0010207|GO:0015979
Viun11g01498 289 NCBIfam photosystem II biogenesis protein Psp29 62 268 IPR017499 GO:0010207|GO:0015979
Viun11g01498 289 Pfam Thylakoid formation protein 66 271 IPR017499 GO:0010207|GO:0015979
Viun11g01498 289 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 284 IPR017499 GO:0010207|GO:0015979
Viun11g01498 289 MobiDBLite consensus disorder prediction 264 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01498 Viun-Chr11 31182806 31188595 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01498 - - gmx:100779964 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01498 11 31182806 31188595 Viun11g01498 11 31182806 31188595 ECH
Viun5g02989 5 41126277 41128733 Viun11g01498 11 31182806 31188595 PCT