Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02975 ATGCGGCGACGAGCGACGGATTTTCGCAGGCCAGTGCGTAAGAAGGTTCCAGATGCTCTGTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTCTATATTCTGAGCAAAGGGAACAAAATTGAGTCCAGACCCGCTTTGTCCAAGAGAACTTACAAGCATGATAAGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAACTCTAACTCGGTCACAAGACAACTCAATGATCAGATATCTCTGGCAAAAGCTTTTGTCGTAATTGCAAAAGAAAGCAACAATCTCCAATTTGCTTGGGAATTAAGTGCTCAGATCCACAATTCACAGAGGCTCCTCTCAAATGCTGCAACTAGGCGTGTTCCTTTGACAACAAGGGAAACAGAAAAGGCTATCCGTGATATGGCATTATTGTTATACCAAGCCCAGCAGCTCCATTATGATAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAGCTCTTGAGGAACAGATGAATTTAGTTACTGAAAAGAGTTCGAAATACGGACAAATTGCTGCTGAAGAAGTTCCAAAAAGTCTGTACTGCCTTGGTGTTCGGTTGACAACGGAATGGTTCAGAAACTTTAATCTGCAAAAGAAATCGAAGGACAAAAGACAAATGGAGATGAAGCTCAAGGATAACAACCTTTACCACTTCTGTGTTTTCTCTGATAACATTCTTGCAACTTCAGTTGTGGTCAATTCAACTGCAATGAATTCTAAAAATCCCAACATGATTGTTTTTCACCTTGTCACTGATGAAATAAACTATGCTGCGATGAAGGCATGGTTTGCCGTGAACGATTTCCATGGAGTGTCTGTGGAAGTGCAGAAGTTTGAAGACTTTACTTGGTTAAATGCATCGTATGTTCCTGTGCTCAAGCAACTTCAAGACTCTGAAATACAGAGCTACTACTTTTCTGGCAACAGTGATGAGGGAAGAACACCTATCAAGTTTCGTAACCCTAAATATCTATCAATGCTTAATCACCTGAGATTCTACATACCTGAAGTCTTTCCCTCACTAAAGAAGGTGGTGTTCTTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATCTGAATGGTAATGTAAATGGAGCTGTTGAAACATGCATGGAGACATTTCACAGATACCACAAATATTTGAACTACTCTCATCCTCTTATACATGCACATTTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTCAATGGAGGAAAAAGAACGTAACTGGCATTTACCATTACTGGCAGGAGAAGAACGTGGACCGGACATTGTGGAAACTTGGTACCTTGCCGCCTGGACTGTTGACATTTTATGGATTAACTCAGCCCTTAGATCCATCGTGGCACGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATAGAGAGGGGTGCTGTGCTACATTTCAATGGAAATTCCAAGCCATGGTTGAAGATTGGGATAGAGAAGTACAAGCCCCTGTGGGAAAAATATGTTGAATACTCTCATCCTTTATTGCAGCAGTGTAACTTCCACTGA 1602 0.4107 MRRRATDFRRPVRKKVPDALWWALCCAVILLFVYILSKGNKIESRPALSKRTYKHDKIMEGLNITEEMLNSNSVTRQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQRLLSNAATRRVPLTTRETEKAIRDMALLLYQAQQLHYDSATMIMRFKAKIQALEEQMNLVTEKSSKYGQIAAEEVPKSLYCLGVRLTTEWFRNFNLQKKSKDKRQMEMKLKDNNLYHFCVFSDNILATSVVVNSTAMNSKNPNMIVFHLVTDEINYAAMKAWFAVNDFHGVSVEVQKFEDFTWLNASYVPVLKQLQDSEIQSYYFSGNSDEGRTPIKFRNPKYLSMLNHLRFYIPEVFPSLKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIHAHFDPDACGWAFGMNVFDLVQWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTQPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKYVEYSHPLLQQCNFH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02975 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 526 IPR029044 -
Viun5g02975 533 Coils Coil 155 175 - -
Viun5g02975 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
Viun5g02975 533 CDD GT8_like_1 228 520 - -
Viun5g02975 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 64 532 IPR029993 GO:0047262
Viun5g02975 533 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02975 Viun-Chr5 41060017 41063568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02975 1 533 Glycosyltransferase AT2G20810 78.545 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02975 K13648 - gmx:100792018 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02975 5 41060017 41063568 Viun5g02975 5 41060017 41063568 ECH
Viun5g02975 5 41060017 41063568 Viun11g01490 11 31088515 31091264 PCT