Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02960 ATGGTTGGGGAGCTACAGTATCTCAGACATGGATGCTTCTCAGTTGGAATCTCTTTTCACTTCTCTTGTTCCCCTTGCAACGCATGCAGATTTCGAGCCATTTATCCAAAAAATTGCAAATGGAGACACTGCTCCTTTACTCACACAACAACCTATAACCACTCTCTCTTTAAGAGGTTGTGCAGTTCTGGAACAACAGAGGGGAGGCAGAAGTTCGTACCCTTTACCCGCCATAGTGCTCAAACCACCCTTCAAACTTTCACTCTATCAGCAGCCTTTAGATCAAGGGTTTATCCCACAAGGGAAGGTGGCAGGATTCTTGAATTCATATACAGCAGCAACCAGTTCAAAACAAAAGGAGGTTTAATGGTTGGAACAGCCACAACACATTATTATGCAAGCGAGGAATTCAAAACCAAACAAGAGAAAACAAAGGCATTCATTTGCAGTCCCTACGAAGTTATATCAGGAGGGGACTACAAACAATCCACGTACTGTCACCTCCTTCTTGGCCTCTTCCTCTGTGATCACGTAGAGTTTATTTCCTCGGCTTTTGTCTATGGCATAGTGCAAGCTTTTTGCACCTTCGAAGAGGTTTGGAAAGACCTTTGCAATGACATTAGAGATGGGACTTTGAGTTCAAGAATCAAGATACCCAAAATGAGAGATGCTGTTTTGGGAATCATCTCTTCAAACCCCTCTTTGGCCTCAAAACTAGAAGCCTCTTGCTTGGAGCTAGAAGCGGTGGATTGGTTTGGTTTGGTTCCCAAACTTTGGCCGAACGCCAAGTACGTTTGTTCCATAATGACAGGTTCTATGCAACATTACTTGAAAAAGCTTAGGCATTATGCAAATGGGGTGCCACTAGTAAGTGGTGACTATGGTTCAACCGAGAGCTGGATAGGGATTAACGTGGATCCGAGTTTGCCTCCAGAGAAAGTAACCTTTGCTGTGGTACCCACGTTCTCTTACTTTGAGTTCATACCAATTTATAGACACAAACACAAACAAGATTCCAGCTTTGTAGCCGATCATGATTTCGTGGAAGACGAACCAATCCCTCTTTCCCAGGTTAAAGTTGGCCAAGAGTACGAAATAGTGCTTACAACTTTTACTGGGTTGTATAGGTGCAGACTAGGAGATGTGGTGGAAGTGGGAGGTTTTCACAATGGGACCCCAAAGTTGAATTTCATATGCAGAAGAAAACTAATTCTAACAGTGAATATAGATAAGAACACGGAGAGAGACCTTCAAATAGTGGTAGAGAAAGGGTCACAGATTCTGAACAAGGCCAAAGCTGAGCTCGTTGATTATACAAGCTATGCAGATATGTCTAACGAACCAGGGTGTTACGTCATTTTCTGGGAGGTGAAAGGTGAGGCTGAGGATAAGGTACTTGAGGCATGTTGCAGGGAAATGGATGCAGCTTTTGTCGACCATGGCTATGTGGTGTCAAGGAAAACAAGATCAATAGGGCCTTTAACGCTTTGCATTGTAGAGAGAGGAACTTTCAAGAAGATTTTGGATTATTTCGTGGAGATTGGAGCAGCACTGGGCCAGTTCAAAACTCCTAGGTGCACTAACAACCCTGTCCTCGTCAAAATTCTCAGTGCATGCACCATTAAAACATTTCACAGCACTGCTTATAGTTCAACCCATTAA 1662 0.4338 MVGELQYLRHGCFSVGISFHFSCSPCNACRFRAIYPKNCKWRHCSFTHTTTYNHSLFKRLCSSGTTEGRQKFVPFTRHSAQTTLQTFTLSAAFRSRVYPTREGGRILEFIYSSNQFKTKGGLMVGTATTHYYASEEFKTKQEKTKAFICSPYEVISGGDYKQSTYCHLLLGLFLCDHVEFISSAFVYGIVQAFCTFEEVWKDLCNDIRDGTLSSRIKIPKMRDAVLGIISSNPSLASKLEASCLELEAVDWFGLVPKLWPNAKYVCSIMTGSMQHYLKKLRHYANGVPLVSGDYGSTESWIGINVDPSLPPEKVTFAVVPTFSYFEFIPIYRHKHKQDSSFVADHDFVEDEPIPLSQVKVGQEYEIVLTTFTGLYRCRLGDVVEVGGFHNGTPKLNFICRRKLILTVNIDKNTERDLQIVVEKGSQILNKAKAELVDYTSYADMSNEPGCYVIFWEVKGEAEDKVLEACCREMDAAFVDHGYVVSRKTRSIGPLTLCIVERGTFKKILDYFVEIGAALGQFKTPRCTNNPVLVKILSACTIKTFHSTAYSSTH 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02960 553 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 59 549 IPR004993 -
Viun5g02960 553 Pfam GH3 auxin-responsive promoter 61 529 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02960 Viun-Chr5 40943408 40947051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02960 60 547 EF-hand Containing Proteins AT1G23160 35.657 1.10e-99 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02960 K14487 - gmx:100814683 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02960 5 40943408 40947051 Viun5g02960 5 40943408 40947051 ECH
Viun5g02960 5 40943408 40947051 Viun11g01469 11 30848626 30852007 PCT