Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02772 ATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGGAAAAACCAACGGTTTCATTCCTAGTTCATTTCGTGCTCTTTCTAGCTATCTCAGGATTGTTTCCTCTGGTGCTTCCACAGTTGCACGTTCTGCTGCATCTGTTGTAGCTTCATCCGTTGTGGACAGAGATGATGTTCCCGACCATGATCAGGTTATCTGGGCTGGGTTTGACGAGTTAGAGGGTGAGGGTGGAGTTATTCAGCAAGTACTTCTTCTAGGCTATCGGTCTGGCTTCCAGGTTTGGCATGTCGATGAATCAAATAATGTCCGTGACCTTGTATCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCAATTGCATCAAAGAGATCTGAAGACAATTATGCGAACAGTCGGCAGCTCTTGGTTGTTTGTACTGATGGATTCTTTGTAGGAGGGAGCAATGTTCAAGATGGGTTGGCCACCCCTAATAATGGCAGCATTTTAAACTCACATGAACAAATGAATGGAAACTATTTGCCAACTACCGTTAGGTTTTATTCTATGAAATCTCAATCGTACGTTCATGTGCTGAAGTTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGCGTTGTTGCTATCTCCCAGTCCACTCAGATTCACTGTTTTGAAGCTACCACATTAATAAGGGCGTATATTTTACTTACCAATCCTATAGTCATGAGTGTCCCTGGTTCTGGAGGCATAGGTTATGGACCACTGGCAGTGGGACCAAGATGGTTGGCATATAGTGGAAGTCCAGTTGCTGTTTCCAATTCAGGACATGTCAGCGGACAACATTTGATGCCTTCTGCAAATTTTCCTTCTAATGGGAGTTTACTTGCTCACTATGCCAAAGAGTCCAGCAAGCATATAGCTACTGGTATTGTATCCCTCGGAGACATGGGGTATAAGAAACTTTCCAGATACTGCTCTGATAACAATGGTTCATTTCAAACTGTAAATTCTGGCTCTAAGGGTACCGGAACCATTAATGGCCATTCAACAGATGCAGATAACATTGGAATGGTTATTGTTAAAGATATTCTCTCCAGAAACGTCATTGCCCAGTTCCGGGCCCACAAGAGTCCTATTTCAGCATTAAGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCCATTCAGGGTCATAACATAAATGTTTTCAAGATCATGCCTGTACAGGACAATTTGTCTGCTTCTGATACTGGCCCTTCTTATGTTCATTTGTACAAGCTGCAACGTGGGTTTACAAATGCGGTTATTCAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCTTCGAGGGGCACCAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCTGTCCTACGATGATAGTTTTACCACAAAAAATAGTGGATTAGGCACTACAGTTAATCACTCCCAGGGATGGTCTCATAGTTCAGCCATGCAAAAGCCTAAACAGAAGAGTTTGGTTGTGGCTGGCCCTCCAATCACTCTTTCCGTGGTAAGCCGGATCCGGAATGGAGCCAATGGGTGGAGGGGCAGTGTAACTGGTGCTGCTGCTGCTGCAACTGGTAGAAAGACTTACCTTTCTGGGGCTATTGCTTCATCTTTTCGCAAGTATAAAAGTTCTGAAGGGAACTATTCAAAGTATCACATGTTGGTCTTTTCACCAACTGGTTCTATGATACAATATGCTCTGCGGATGTTAACCAGTCAAGATTCAGGTTTTGCCTCTGGGTTGGTTCCTGCATATGAATCCCTTCAACAGGATGATGCAAGATTAGTAGTTGAGCCTATCCAAAAATGGAATATTTGTCAGAGTCATAGTCGAAGAGAGCGAGAAGATAACATAGATATATATGGTGAGAATGGAATTGCAGATGCCAATAAAATATATCCAGAGGAAGTGGCTGAGGAGCACACCATTAGCCCGAAACTCAGTAATGGAGATATTAAAGTAAATCCCTCTCTTGAGGAGAAGAATCATTTGTATATTTCAGAAGCTGAACTTCAAATGCATCAAGCTCAGACTTCATTATGGGGAAAACCAGAGATATATTTTCATTCAATGTTGCAAGAGCCTAACTTAATGGGTGAAGAAGCTGCTTCCAAAGGCGAATTTGAGATCGAAAGGATTCCAACATGCGTCATTGAAGCTAGATCGAAAGACTTGGTTCCGATTTTTGACTATTTTCAGACTCCAAAGTTGCAGCAAGCAAGGACTTCTATGGATAGCAAAAATGATGACCAACTGTTACATAACAGTTTGCAGGCATCTGGAAATGGCAGGATTTCATCTAGGAGTGGTGATGGTGATGCTGTTTCTGAGTTAAGAAATGGGATTGAAGGAACTGATTTGGATAATCATGTGGTGCCTTCTGAAACTGAGAGCTTTGTAAATAACAATGACACCTTTAAACCAAATACTCAGCATGAGATTGTAAATAATAGAAGGGAGCACTTAGACACCGAGGCTCAACTCATGATTGTAAATAGTGACAGAAAGCATGAAAATGAAGAATCATTTTGA 2607 0.4189 MGMRNDAQKQQLLHQGNGGGKTNGFIPSSFRALSSYLRIVSSGASTVARSAASVVASSVVDRDDVPDHDQVIWAGFDELEGEGGVIQQVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDNYANSRQLLVVCTDGFFVGGSNVQDGLATPNNGSILNSHEQMNGNYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSSRVVAISQSTQIHCFEATTLIRAYILLTNPIVMSVPGSGGIGYGPLAVGPRWLAYSGSPVAVSNSGHVSGQHLMPSANFPSNGSLLAHYAKESSKHIATGIVSLGDMGYKKLSRYCSDNNGSFQTVNSGSKGTGTINGHSTDADNIGMVIVKDILSRNVIAQFRAHKSPISALSFDPSGTILVTASIQGHNINVFKIMPVQDNLSASDTGPSYVHLYKLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNILSYDDSFTTKNSGLGTTVNHSQGWSHSSAMQKPKQKSLVVAGPPITLSVVSRIRNGANGWRGSVTGAAAAATGRKTYLSGAIASSFRKYKSSEGNYSKYHMLVFSPTGSMIQYALRMLTSQDSGFASGLVPAYESLQQDDARLVVEPIQKWNICQSHSRREREDNIDIYGENGIADANKIYPEEVAEEHTISPKLSNGDIKVNPSLEEKNHLYISEAELQMHQAQTSLWGKPEIYFHSMLQEPNLMGEEAASKGEFEIERIPTCVIEARSKDLVPIFDYFQTPKLQQARTSMDSKNDDQLLHNSLQASGNGRISSRSGDGDAVSELRNGIEGTDLDNHVVPSETESFVNNNDTFKPNTQHEIVNNRREHLDTEAQLMIVNSDRKHENEESF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02772 868 SMART WD40_4 370 410 IPR001680 GO:0005515
Viun5g02772 868 SMART WD40_4 426 467 IPR001680 GO:0005515
Viun5g02772 868 MobiDBLite consensus disorder prediction 1 20 - -
Viun5g02772 868 FunFam Breast carcinoma-amplified sequence 3 293 519 - -
Viun5g02772 868 Gene3D - 86 520 IPR015943 GO:0005515
Viun5g02772 868 SUPERFAMILY WD40 repeat-like 89 469 IPR036322 GO:0005515
Viun5g02772 868 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 19 844 IPR045142 GO:0006914
Viun5g02772 868 Pfam Breast carcinoma amplified sequence 3 519 752 IPR022175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02772 Viun-Chr5 39223931 39230028 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02772 - - gmx:100784596 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02772 5 39223931 39230028 Viun5g02772 5 39223931 39230028 ECH
Viun5g02772 5 39223931 39230028 Viun11g01040 11 22521505 22527923 PCT