Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01040 ATGATTGAATTTAAGGGTGGATTTGAAGAATCGGTGGTGACCCTTTTGTTGTTGTGTCTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAAAAATGATGACCAGAATCAACAGGACCTTCTTCATGGAGGTGTTGCTGCTGGTAGTGATGGCAGAACCAACAGCAAGAACAACCGCAATGGCTTTATTCCCAGCTCCTTTCGTACTTTCTCTGGTTACCTGAAGATTGTTTCATCAGGCGCTTCTACCGTTGCTCGGTCAGCTGCTGCCTCTTTTGCATCATCGATTTTGGATAAGCATGGTGATACTGACCGTGATCGGGTAATTTGGGCTGGGTTTGACACGATAGAGGGGCAGGGAGAAGTCACTCGGCAAGTACTTCTTCTAGGCTATTGGTCCGGCTTCCAGGTTTGGGATGTTGATGATTCAGATAATATCTGTGACCTAGTTTCCAAACACGATGGTCCTGTTTCTATTATGCAAATGGTACCAAGTCCAACTGTACCGAAGAGACTGGAGGACAAGTTTGCAGACATGCGTCCACTGTTGGCAGTATGTGTGGATGATTTGTTGGTGGGGGGAGGAAAAATACAAGAGGGGTTGGTTCCCACTAGCAATGGGGGCACTTTAAACCAAGTGAATGGAAACTATCTGCCATCAACTGTTCAATTTTATTCTATGAGATCCCAATCATATGTTCATACACTAAACTTTAGATCAGTTGTTTATTCTGTAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTAGCCACTCAGATACACTGTTTTTCTCCCACAACTTTAGTAAGGGAATATATTTTACATACTAATCCTATAGTCATGAGTTATCCTGGTTCTGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCAAGATGGCTGGCCTACAGTGGAAGCCCTACTGTAATAGCTTCTTCTGGGCGTGTCAGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGCTTTTCTTCAAATGGGAGCTTGGTTGCGCACTATGCCAAAGAGTCTAGCAAGCATCTTGCCGCTGGGATAGTGACCCTTGGAGATATGGGGTACAAGAAACTTTCAAGTTACTGCTCAGAACTTCTCCCAGATAACAATGGTCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGGGATATTGTCAGTAAAAATGTCATTGCCCAATTTCGGGCCCACAAGAGTCCCATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATCTTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATAATGCCTGGATATGACAGAGTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTTATTCAAGATATCAGTTTTAGTGTTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTATCATGTGACAATAGTTTAACAGAAAACGATGGTTTGAGTGTTATGCCTAATCAAGCAGTTCATCGGCCTTGTAGTTCAGCTGTAAAAATTTGTAAACAGCAGAGCCTCTGTGCTGCTGGTCCTCCTATCACACTCTCTGTTGTTAGCAGAATTAGGAATGGAACTAATGGCTGGAGAGGCACAGTAACTGGTGCCGCTGCAGCTGCAGCTGCGACAACTAGGTTGGGTTCCATTTCCGGGGCTATTACTTCTTCTTTCTATAACTTAGAAGGCAGAAGTACCTTGTGTGTTAATGGGAACTATTCCAAGGAAAAGTATCATCTGTTGGTCTTTTCATCCACAGGTTCAATGATACAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGATGTTGTTCCTGGAGTAATTCCTGCACATGAGTCTGCCCCTATGACTGATGCGAAAGTAGTTATTGAGCCTATCAAGAAGTGGAATATAAGTTGTAGACATAGTTGGAGAGAGGGAGTAGAAAATATCGACATTTATGGAGAGAATGGAGTTTCAGACATCGATAAAGTTTCTGAGGAAGTAAACGATAATATCATCAGCCCTAAAATGAAGAATCTATCTCTGAAATCGAATCCCCGTTCTGAGAAAGAACATCATTTGTATATTTCAGAAGCTGAACTCCATATGCATGAAGCAAAGACACAATTGTGGGCAAAGACTGAGATATATTTTCATCCAGTGGCTAAAGAGGCTGCTTTGATGATGGATGAAGAAGCTGCTCCTCGAGGGGAATATGAGATTGAAAAGATCCCGACTCGTGTGATAGAAGCTAGGTCGAAAGACTTGGTTCCAATTTTTGACTTTATTCAGACTTCAAAATTTCAACATACAAGGATTCCTGCTGTGGATAACAAGTTAAATGAACGATTTTTGTATCAAAAGGGAAGGATTTCACCCAGTAGGAGATCTCCTGGTTGTATGCCTAATTCTGGTGGAAATATTGCTGAATTTAAAAGTGGCGTTGAAGGAAATGAGGGGGATTATGGTTTGATTCCAGCAGAAGCAGAGGGTCTTGTAAATAACAATAACACCCTTAAACCAGATACTAGGCCAGAGACTGTAAATAATAGAAGGGAGCACATAAACATGGATGTTCATCACATGTTTGTAAATAGTGACAGAAAAGGTCTGAAACTGGAGAATCACCATGAAGAAAAAGGAGAGGAATTTGATTGA 2745 0.4215 MIEFKGGFEESVVTLLLLCLWIAVIFISLVLGMSKNDDQNQQDLLHGGVAAGSDGRTNSKNNRNGFIPSSFRTFSGYLKIVSSGASTVARSAAASFASSILDKHGDTDRDRVIWAGFDTIEGQGEVTRQVLLLGYWSGFQVWDVDDSDNICDLVSKHDGPVSIMQMVPSPTVPKRLEDKFADMRPLLAVCVDDLLVGGGKIQEGLVPTSNGGTLNQVNGNYLPSTVQFYSMRSQSYVHTLNFRSVVYSVRCSSRVVAVSLATQIHCFSPTTLVREYILHTNPIVMSYPGSGGIGFGPLAVGPRWLAYSGSPTVIASSGRVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKLSSYCSELLPDNNGHSTDVESVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGYDRVSASDAGPSYVHLYRLQRGLTNAVIQDISFSVDSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTENDGLSVMPNQAVHRPCSSAVKICKQQSLCAAGPPITLSVVSRIRNGTNGWRGTVTGAAAAAAATTRLGSISGAITSSFYNLEGRSTLCVNGNYSKEKYHLLVFSSTGSMIQYALQTINCQDSDVVPGVIPAHESAPMTDAKVVIEPIKKWNISCRHSWREGVENIDIYGENGVSDIDKVSEEVNDNIISPKMKNLSLKSNPRSEKEHHLYISEAELHMHEAKTQLWAKTEIYFHPVAKEAALMMDEEAAPRGEYEIEKIPTRVIEARSKDLVPIFDFIQTSKFQHTRIPAVDNKLNERFLYQKGRISPSRRSPGCMPNSGGNIAEFKSGVEGNEGDYGLIPAEAEGLVNNNNTLKPDTRPETVNNRREHINMDVHHMFVNSDRKGLKLENHHEEKGEEFD 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01040 914 Pfam Breast carcinoma amplified sequence 3 546 787 IPR022175 -
Viun11g01040 914 SUPERFAMILY WD40 repeat-like 129 497 IPR036322 GO:0005515
Viun11g01040 914 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 58 829 IPR045142 GO:0006914
Viun11g01040 914 SMART WD40_4 398 438 IPR001680 GO:0005515
Viun11g01040 914 SMART WD40_4 454 495 IPR001680 GO:0005515
Viun11g01040 914 Gene3D - 125 508 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01040 Viun-Chr11 22521505 22527923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01040 - - var:108340445 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01040 11 22521505 22527923 Viun11g01040 11 22521505 22527923 ECH
Viun5g02772 5 39223931 39230028 Viun11g01040 11 22521505 22527923 PCT