Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02754 ATGTCTCTTACACCTTCCTCTCTTCAGCTTTCGGCTAAACATGCACCACCTCACATCACGCGACCTTGTGCAAATTTTTCTCCTAGCTTTTGGGGCGATACTTTCCTTCAGTATCATTCAGCAGAAATCGATGACAATATGAAGCAACAATTTCAAACGCGAAAGGAAGAAGTGAAGAAGATGTTTCTATCTTCAAACAATAGTATCTTACAAAAACTAAATTTCATTGATTCATTGCAACGTTTGGGTATATCTTATCATTTTCAACATGAAATTGATGAAGCATTAGAACAAATCTACAACTCATCTACAAATGATAATGTCATAATAGAGGAAGGTTGTCTTCACTATATGGCGTTACTATTTCGTTTGCTCAGGCAAAGAGGGTATCATATTTCGTCAGATATATTCAACAAATTCAAGAACAACAAAGGAGACTTTGATCAAAACATTGCCAAAGATGTACAAGGATTGTGGAGTTTGTTTGAAGCTTCACAGCTAAGGATTCACGGGGAAGATATATTAGATGAAGCACTTGATTTCACACACATTCATCTCAAATCCTTGATTGATCAAATGAGTGCATCCTTTGCTGCACAAATAAGTCATTGCTTAAGGAAACCACTTCACAAGGGAGTTCCTAGGTTGGAGGCCAAACGTTACATTTCCTTCTATGAACAAAATCCTTCCCACTGCCAAGTTCTTCTTTTATTTTCCAAAGTAGATTTCAATATGCTGCAGAAATTGCACAAAATAGAAGTTGGAAGTATCACCAAATGGTGGAAAGACTCAGAATTTGCGACAAAGGTCCCTTACGCAAGAGAAAGGGCAGTAGAGTGCTATTTATGGCCAATTGCCATGTCTTATGAAACTGAATATAGTATTCCAAGAAAGATAACTAGCAAATTGATTGTGTGTATCTCTCTTCTAGATGATACTTATGATGCCTACGGCACAATACAAGAACTTGAACTCCTCACACAAGCAATTCAGAGATGGGATAATAGTTCCATTCAATCTCTTCCAGATAGCATGAAAGTAGTGTTTAATGCAATTGTAGAAGTGTGTGATGAAGTAAGGTTGAGTACCTTAGAGAGTGAAAAATCAAGCATAATAGTGCAATGTGTTAAAGAAGCTTTTTATAACTTGGCACGAGCGTACTTGACTGAAGCAAAATGGAGTGAAGAGATATGTGTTCCAACATATGAAGAATATAAGGATAATGGAGTTATATCTTCTACATACCCTCTTATGATAACGTCATTTCTTCTTCTAACAAAATTTTCAACTCAAATTGATTGGATTTTGAGTAATCCAGCAATCATCGAAGCTGTTTCACTTATTGGCAGACTTGGGAATGACATATGCTCGCATAAGTTTGAACAACAAAGAATGAACGTGGTTTCAGCAGTTGAATGTTGCATGAAACAATATGAGATTTCACAGGAAGATGCTTACAAATTGATTGAAAAAGAGATTGAAGATTTGTGGAAGGTTATAAATGAAGAGTATTTGAAGTTAGACCATGTTCCTACAGCCATGCTTGATTGTATTCTTAATGGAGCTCGCATAACTGAACTTGCCTATGAAAACTTCGAAGATAAATACACAGACGTAAAACTATGGAAGGATGACATTTTTGCATTACTTGTGAATCCCATAAGCATGGAGGAACCCAAGTAA 1683 0.363 MSLTPSSLQLSAKHAPPHITRPCANFSPSFWGDTFLQYHSAEIDDNMKQQFQTRKEEVKKMFLSSNNSILQKLNFIDSLQRLGISYHFQHEIDEALEQIYNSSTNDNVIIEEGCLHYMALLFRLLRQRGYHISSDIFNKFKNNKGDFDQNIAKDVQGLWSLFEASQLRIHGEDILDEALDFTHIHLKSLIDQMSASFAAQISHCLRKPLHKGVPRLEAKRYISFYEQNPSHCQVLLLFSKVDFNMLQKLHKIEVGSITKWWKDSEFATKVPYARERAVECYLWPIAMSYETEYSIPRKITSKLIVCISLLDDTYDAYGTIQELELLTQAIQRWDNSSIQSLPDSMKVVFNAIVEVCDEVRLSTLESEKSSIIVQCVKEAFYNLARAYLTEAKWSEEICVPTYEEYKDNGVISSTYPLMITSFLLLTKFSTQIDWILSNPAIIEAVSLIGRLGNDICSHKFEQQRMNVVSAVECCMKQYEISQEDAYKLIEKEIEDLWKVINEEYLKLDHVPTAMLDCILNGARITELAYENFEDKYTDVKLWKDDIFALLVNPISMEEPK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02754 560 SUPERFAMILY Terpenoid synthases 233 555 IPR008949 -
Viun5g02754 560 Pfam Terpene synthase, N-terminal domain 31 205 IPR001906 GO:0010333|GO:0016829
Viun5g02754 560 Gene3D - 67 231 IPR036965 GO:0010333|GO:0016829
Viun5g02754 560 FunFam Isoprene synthase, chloroplastic 218 544 - -
Viun5g02754 560 FunFam Isoprene synthase, chloroplastic 67 231 - -
Viun5g02754 560 Pfam Terpene synthase family, metal binding domain 237 498 IPR005630 GO:0000287|GO:0010333|GO:0016829
Viun5g02754 560 SFLD Isoprenoid Synthase Type I 233 555 - -
Viun5g02754 560 SFLD Terpene Cyclase Like 1 C Terminal Domain 233 555 IPR034741 -
Viun5g02754 560 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 231 IPR008930 -
Viun5g02754 560 CDD Terpene_cyclase_plant_C1 21 553 IPR044814 GO:0010333|GO:0016102
Viun5g02754 560 Gene3D Farnesyl Diphosphate Synthase 28 540 IPR008949 -
Viun5g02754 560 PANTHER OS04G0344100 PROTEIN-RELATED 20 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02754 Viun-Chr5 39080966 39084939 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02754 K15803 - gmx:100781367 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02754 5 39080966 39084939 Viun5g02754 5 39080966 39084939 ECH
Viun5g02754 5 39080966 39084939 Viun11g01020 11 21310973 21315124 PCT