Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01539 ATGGAGTACGAGGACCGCTTCAGACAGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTACCCACTAAGCACTGGTATTGCAAAAGCATGTGGACAAAATATTAAAGACTACATGGTGGAAAAGCTTGGCATAGAGAAAAGCAAAATTGATGATTTGTCCAACCTCCTTTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTATGATGAATATCACAGTTTTGTTCATGGAAGATTACCTTATGAGAACTTGAAACCAGACCCAGTTCTGAGGAACCTTTTGCTGAGCCTGCCCTATAGGAAACTAATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTTAGCAGGCTTGGATTAGAGGACTGCTTTGAAGGAATCATTTGCTTTGAGACGCTTAATCGCATCCATAAAAGCACTGTCTCTGATGATGAAGATGACATTGAGTTTGTGGGGGTTTCAAACACAACCAATCCAACCACAAAAAAGGATGCTGGAGCCTCACAAATCTTTGACATCATTGCCCACTTTTCTCAACCCAATCCCAACACAATTTTGCCTAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCTCTCAAGATAGCCAACCTTAACCCCCAAAGAACTTTGTTCTTTGAGGACAGTGTCCGCAACATACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAGAGCATCCACAACCTTAGAGAGGCTGTGCCAGAGCTATGGGAAGATGACATAAAATCAGAAGTTGCTTACCCTGGAAACCTTGCTGTGGAGACATCTGTGACTGCTTAG 909 0.4158 MEYEDRFRQNQRPKYDCLLFDLDDTLYPLSTGIAKACGQNIKDYMVEKLGIEKSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNSDKVHAVKALSRLGLEDCFEGIICFETLNRIHKSTVSDDEDDIEFVGVSNTTNPTTKKDAGASQIFDIIAHFSQPNPNTILPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNIQAGKRVGLHTVLVGKSQRIKGADYALESIHNLREAVPELWEDDIKSEVAYPGNLAVETSVTA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01539 302 Pfam Haloacid dehalogenase-like hydrolase 210 253 IPR041492 -
Viun5g01539 302 SUPERFAMILY HAD-like 14 281 IPR036412 -
Viun5g01539 302 NCBIfam HAD-IA family hydrolase 208 253 IPR006439 -
Viun5g01539 302 SFLD C1.5.3: 5'-Nucleotidase Like 10 281 IPR010237 -
Viun5g01539 302 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 4 301 - -
Viun5g01539 302 SFLD Haloacid Dehalogenase 10 281 - -
Viun5g01539 302 Gene3D - 8 98 - -
Viun5g01539 302 Gene3D - 99 287 IPR023214 -
Viun5g01539 302 NCBIfam pyrimidine 5'-nucleotidase 16 253 IPR010237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01539 Viun-Chr5 12709985 12713075 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01539 K07025 - gmx:100795391 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01539 5 12709985 12713075 Viun5g01539 5 12709985 12713075 ECH
Viun5g01539 5 12709985 12713075 Viun10g00785 10 8856193 8859385 PCT