Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01502 ATGGCAGAAACAAAGTTGAGTTCCTTCAAAGACAAGAGATGGTCACTCCATGGCATGACAGCTCTGGTCACAGGAGGAACCCGTGGCATAGGCCATGCAATTGCAGAAGAGTTAGCAGAATTTGGGGCAGTTGTGCATGTATGTGCCCGTAAACAACAAGATATTGATCGGTGCTTAGAAGAATGGAATAACAAAGGACTTCGCATAACAGGGTCGGTGTGCGATGTACAATTCCAGGACCAACGTCAAAATTTAATGAAAAATGTCGCAACCATTTTTCAGGGAAAGCTCAACATTCTGATAAACAACGCAGGAACAGCTTCAACTAAGAGCCATTTAGATTATACTGCAGAAGATGTTGCAGTAATAATGGGTACAAATTTTGAGGCATGTTTCCATCTATGTCAACTAGCACACCCACTTCTGAAAGCATCTGGGTGCGGCAACATAGTATTCATATCCTCTATTTCTGGTCTGAAAGCTTTTCCTCTTTGTACTGCTTATGCAGCCTCCAAAGGAGCTTTGAATCAATTCACCAAGAACATAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTGGCACCTGGATGTGTTAAAACAGAACTCCTGGATTCTCTCATGGAAACTGCTGATGTGAATAAGAACGTGGAGGATTTGATGTCTCTATCACCAGCTGGTCGCATTGGAGAACCTAAGGACATATCACCAATGGTTGCTTTCCTTTGCCTTCCAGCAGCTTCATACATCACTGGACAAATTTTAACAGTGGATGGGGGTTCAATACTTTAA 798 0.4261 MAETKLSSFKDKRWSLHGMTALVTGGTRGIGHAIAEELAEFGAVVHVCARKQQDIDRCLEEWNNKGLRITGSVCDVQFQDQRQNLMKNVATIFQGKLNILINNAGTASTKSHLDYTAEDVAVIMGTNFEACFHLCQLAHPLLKASGCGNIVFISSISGLKAFPLCTAYAASKGALNQFTKNIALEWAKDNIRANAVAPGCVKTELLDSLMETADVNKNVEDLMSLSPAGRIGEPKDISPMVAFLCLPAASYITGQILTVDGGSIL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01502 265 PANTHER TROPINONE REDUCTASE 12 263 IPR045000 GO:0016491
Viun5g01502 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Viun5g01502 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Viun5g01502 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Viun5g01502 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Viun5g01502 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Viun5g01502 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 263 IPR036291 -
Viun5g01502 265 Gene3D - 3 265 - -
Viun5g01502 265 FunFam Short-chain dehydrogenase reductase 5 265 - -
Viun5g01502 265 Pfam Enoyl-(Acyl carrier protein) reductase 27 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01502 Viun-Chr5 12144963 12146685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01502 11 262 Miscellaneous Gene Families AT2G29290 53.175 4.23e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01502 K08081 - gmx:100306108 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01502 5 12144963 12146685 Viun5g01502 5 12144963 12146685 ECH
Viun1g03117 1 39407070 39410285 Viun5g01502 5 12144963 12146685 ECH