Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03117 ATGGCGGAGTTGGAAGAAAGCAGCAGTAAGAGTAAGAGAGGCGGAAGATGGTGTCTGAAGGGAATGACCGCTCTCGTCAGTGGCGGCACTCGTGGGATAGGGCACGCCATTGTGAGTGATTTGGCGGCGTTTGGCGCCGCCGTGCACACTTGTTCCAGGACTCAAACAGAGCTCGACAAGTGCTTAGAAGAATGGCGGAGTGAAGGCTTTCAGGTTACTGGATCGGTGTGTGACGTGACCTCACCACACGACAGAGAGAAGCTTCTGCAGAAAGTTGCATCAATCTTCGATGGAAAGCTTAACATCTATGTAAACAACGTTGGAACAAACTTCAGAAAACCAACAATCGAGTACAGTGCTGAAGAATATTCACAGCTTATGACAGTTAATTTAGATTCCTCATTCCATCTGTGTCAACTCGCGTACCCTCTTCTCAAAGCATCTGAAAAGGGAAGCATTGTGTTCCTTTCCTCTGTTGCTGGTGTCACCAGCATGGGTACTGGATCTGTTTATGCAGCAAGTAAAGCCGCAATTAATCAGCTTACAAAAAATTTGGCTTGTGAATGGGCAAAAGACAACATAAGAAGCAACTGTGTTGTACCATGGACCACCAGAACCCCACTTATCCAACATTTGCTCCAAAATCAAAGTTTTGTGGATGATGTGATGTCTCGTACCCCACTTAAGCGCATCGCAGAACCCGAAGAAGTGTCATCTTTGGTGACTTTCCTCTGCTTGCCTGCTGCATCGTATATTACTGGACAAGTTATTTGTGTTGATGGAGGAGTCACTGTTAATGGATTTCAACCCAGCATTAGAATTACTTGA 828 0.4589 MAELEESSSKSKRGGRWCLKGMTALVSGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELDKCLEEWRSEGFQVTGSVCDVTSPHDREKLLQKVASIFDGKLNIYVNNVGTNFRKPTIEYSAEEYSQLMTVNLDSSFHLCQLAYPLLKASEKGSIVFLSSVAGVTSMGTGSVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWTTRTPLIQHLLQNQSFVDDVMSRTPLKRIAEPEEVSSLVTFLCLPAASYITGQVICVDGGVTVNGFQPSIRIT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03117 275 PANTHER TROPINONE REDUCTASE 16 267 IPR045000 GO:0016491
Viun1g03117 275 Pfam Enoyl-(Acyl carrier protein) reductase 30 264 - -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 23 40 IPR002347 -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 98 109 IPR002347 -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Viun1g03117 275 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Viun1g03117 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Viun1g03117 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 IPR002347 -
Viun1g03117 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Viun1g03117 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 265 IPR036291 -
Viun1g03117 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Viun1g03117 275 FunFam Short-chain dehydrogenase reductase 10 269 - -
Viun1g03117 275 Gene3D - 4 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03117 Viun-Chr1 39407070 39410285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03117 16 270 Miscellaneous Gene Families AT2G29290 61.479 1.94e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03117 K08081 - gmx:100791265 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03117 1 39407070 39410285 Viun1g03117 1 39407070 39410285 ECH
Viun1g03117 1 39407070 39410285 Viun5g01502 5 12144963 12146685 ECH