Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01349 ATGGGCGATTTCAACCTCGCCCTGGTGATCGTGGCGGTGGTGGTCTGCGTGATCGTGTTCCTCGTCAACGTGTACCTCTTGGTCAACTATCAGCATCCCGACGATGCCAACCAGGCCTACTTCCCCAAATTCGTCGTCGTTTTGGGCCTCTCTATCGCCGCCATCTCCATCCTCATGCTCCCCGCCGACGTGGCTAACCGCCATGCTTGCCGCCACGCGATCTACAACGGGGCATGCAACCTCACGCTTCCCATGAAGGACCTCTGGCTCGCCGTTTACATCGTCGACGCCATCCTCGTCTTCTTCGTCATCCCATTCGCCATGTTCTACTACGAGGGCGACCTTGACAAGAGTATGGGGACGAGGATTAAGAGTGCGTTAATGTGGATGGTCACCACGGCAATAGTGTGCGCCCTCCTTCTGGGTATTTTATACGGGCTGGTTGGTAAGGTGGACTTTACTGTCAGGCATCTCTCTTCATCCACAACTGCATTTCCTAGCACATGGACATTCAATAGTAATGAACCATGTATTAAAAATGGTGTCCATCAGTGCTCAGCTTACTCTGCCAGTCCTTCGTCAGAGCAAACATGGACCATGCGTACTACCTTCCCAGAATATGTTGTTGCACTCGCTACTATTGTTGGATCTGTGCTTTTTGCTATATTTGGCGGTGTTGGTATTGCATGTCTTCCATTAGGACTTCTATTTTCATTTATTCGGCGTCCAAAAGCTGTTATCACTCGATCACAGTATATCAAGGAAGCCACTGAACTAGGTAAAAAAGCAAGAGAATTAAAGAAAGCAGCTGAGGATCTCCGTCAGGAAGAAAAGGGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGCAGTCGAGAAGGAGGTGTTTCAATTAGAAGAAGACGTAAAGCTCCTTGAAGAGATGTATCCTCAAGGGGAAAAGGCTGAGACAACATGGGCACTAACAGTTCTTGGTTATCTGGCAAAACTTGTTCTCGGAATTTTAGGGTTGATTGTTTCCGTGGTGTGGATCATTCATATTATTATCTACCTATTAATTGATCCACCACTTTCTTCTTTCCTGAATCAAGTTTTCATCAAGCTAGATGATGTCTGGGGTCTTCTCGGCACTGCTGCATTTGCATTTTTCTGCTTCTACCTTCTCCTTGCTGTGATTAATGGTGCCATGGTGCTTGGACTGAGACTAGTTTTTATTACTATACATCCCATGAAGTGGGGAGCAACTCTTATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTCTTCTATTAGTGTGATCCAGTTCTGCTCCACAGCTTTTGCCTACTATGCTCAAGCAACTGCAGCCCAGGAAATATTTGGCCACACTTTGGAGTCTCTTCGAGGAATTAAATATTTATACAAGTATAATGTGTTCCAAATTGCGTTTGTTATTTTAGCTGGATTGACCTTTGTGTATTACGCTGCGTTTGGATGGAGAAGAAAAACACCTAGTGGCAGGTTCCAATTATCTACATAA 1530 0.4542 MGDFNLALVIVAVVVCVIVFLVNVYLLVNYQHPDDANQAYFPKFVVVLGLSIAAISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAVYIVDAILVFFVIPFAMFYYEGDLDKSMGTRIKSALMWMVTTAIVCALLLGILYGLVGKVDFTVRHLSSSTTAFPSTWTFNSNEPCIKNGVHQCSAYSASPSSEQTWTMRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLLFSFIRRPKAVITRSQYIKEATELGKKARELKKAAEDLRQEEKGGSKGRKFRKNVKAVEKEVFQLEEDVKLLEEMYPQGEKAETTWALTVLGYLAKLVLGILGLIVSVVWIIHIIIYLLIDPPLSSFLNQVFIKLDDVWGLLGTAAFAFFCFYLLLAVINGAMVLGLRLVFITIHPMKWGATLMNSFLFNVGLILLSSISVIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVILAGLTFVYYAAFGWRRKTPSGRFQLST 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01349 509 Coils Coil 256 276 - -
Viun5g01349 509 Coils Coil 290 310 - -
Viun5g01349 509 Pfam LMBR1-like membrane protein 9 281 IPR006876 -
Viun5g01349 509 Pfam LMBR1-like membrane protein 285 487 IPR006876 -
Viun5g01349 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01349 Viun-Chr5 10158480 10163927 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01349 K14617 - gmx:100816750 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01349 5 10158480 10163927 Viun5g01349 5 10158480 10163927 ECH
Viun5g01349 5 10158480 10163927 Viun10g01189 10 21775019 21780748 PCT