Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01208 ATGGCGAGCTTGAAGGTAGCATGCATGATTGTGATGTGCATGGGTATGGTGGGTGCACCGATGATGGTGCATGGCATTTCATGCAGCGAAGTGACAACATACATGGCACCGTGTCTATCATACCTGAGGAATGGTGGAGAGGTTCCAGATTCGTGCTGTGGAGGAGTTAGGAGCATTCTGGGAGCAGCTGGAACAACCTCTGAAAAACAAACCGTCTGCAACTGTCTTAAGGAAGCTGCTAATAACTTCGGCATCAATGACGATTACGCTCAGGCGCTCCCTACTTTCTGCGGCGTCACCGTTTCTTACAAGATCAGCCGCTCCACCAACTGCCAAAACATCAGGTTCTGA 351 0.5014 MASLKVACMIVMCMGMVGAPMMVHGISCSEVTTYMAPCLSYLRNGGEVPDSCCGGVRSILGAAGTTSEKQTVCNCLKEAANNFGINDDYAQALPTFCGVTVSYKISRSTNCQNIRF 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01208 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 112 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 SMART aai_6 28 111 IPR016140 -
Viun5g01208 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 113 IPR036312 -
Viun5g01208 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Viun5g01208 116 Pfam Probable lipid transfer 10 104 IPR016140 -
Viun5g01208 116 CDD nsLTP1 26 111 - -
Viun5g01208 116 Gene3D - 25 115 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01208 Viun-Chr5 8610453 8611180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01208 4 115 Acyl Lipid Metabolism Gene Families AT2G38540 38.596 7.46e-26 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01208 - - pvu:PHAVU_008G087100g 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01208 5 8610453 8611180 Viun10g01408 10 28143079 28143906 PCT