Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01180 ATGAGAAGCAGTGAAGGTAGGGAAACAACAAGAAACTGTGGTTGTGGCAGGTTTCTTCATGACCTTCCTCAACAGTTACACAACCTTCTCAGCGAACTTTTCCCTACCCTTTCTCTCTCTGAGGTGAAAGAAGAGTTCAAATCACTAGCGAACATTGCATGTCCAATAATGATGACGAACGTGCTTCTGTACTCAAGATCTGCCATTTCCATGCTTTTCCTGGGTCGGCAAGGGAAAGTGGAGCTAGCTGGAGGAGCACTTGCAATAGGGTTTGCAAACATCACTGCAAATTCATTCCTCAAGGGTCTTACCATGGGAATGGACCCAATTTGTTGCCAAGCATATGGAGCAAAAAGATGGTCAGTTCTAAGCCAAACCTTTTTCAAAACCTTGTGCCTTCTCTTCCTTGTTGCCATCCCCATTTCACTACTATGGCTAAACATGGCCCCTCTCCTACACTGGCTAGGCCAAGACCCTGAAGTCACACAGGTTGCACAGGTTTACATGGTCTTCTCTATCCCAGAGCTCCTTGCACAAGTTCATCTCAATCCATTGAGGTCTTTCTTGAGAACACAAGGCTTAACAGCTCCACTAACAGTAGCTGCATCTTTTGCAGCCATTTTACACCTTCCAATAAATTACTTCTTTGCTACATATTTGAAGCTGGGAGTGAAAGGCATTGCACTAGCCACAGGTTTGAACTCCATAAACATGATCCTAGGCTTAGTGCTTTATCTTCTTCTGTCAGAGAAGCCTCTAAAACCTTGGGAAGGAGCCACTGTTCTCTCTTCTTTTCGTGATTGGAGACCGTTGCTTACTCTGGCATTGCCAAGTTGCATCTCAGTGTGCTTGGAGTGGTGGTGCTATGAGATAATGCTCTTCCTATGTGGGCTTTTGAGTAATCCACAAACCACTGTTGCTACCATGGGTGTCCTGATTCAAACAACTGGGTTCCTATATGTGTTCCCATTTTCATTGAGTGCTGCCTTGACAACACAGATTGGTCACTCACTAGGTGCAGGGCAACCCTTACGTGCACAAAGTACAGCCACAATAGGACTTTTCATAGCATTTGCATCTGGGGTCTCAGCCTTTGTTTTCTTGATGTTTGTGAGGAAAGTGTGGGGGAAACTCTTCACGACTGAGACACAAATTGTTGATATGGTCACAACCATACTTCCAATTCTGGGGTTGTGTGAGATCGGTAACTGGCCTCAAACTGCTGCTTGTGGGATCTTATCAGGGACTGCACGCCCTTATGTGGGTGCAAGAATAAACCTTTGTGCTTTTTACTTGATAGGGTTGCCAGTTGCAGTTTTTGCTGCTTTCATGCACAGATACCAGTTGAGGGGTTTGTGGTTTGGCATGTTGGCTGCACAAATTTCGTGTTTTGGAATGATGGTTTACACATTGATTCAAACAGATTGGGGGCATCAAAGTAAAAGAGCTGAGCAACTGGCTCGAACAACAGATGACGAGGAAAATGTAAATGATGATGAGGAATGTGGACTCCTTAATTCTGATTTATGA 1530 0.4464 MRSSEGRETTRNCGCGRFLHDLPQQLHNLLSELFPTLSLSEVKEEFKSLANIACPIMMTNVLLYSRSAISMLFLGRQGKVELAGGALAIGFANITANSFLKGLTMGMDPICCQAYGAKRWSVLSQTFFKTLCLLFLVAIPISLLWLNMAPLLHWLGQDPEVTQVAQVYMVFSIPELLAQVHLNPLRSFLRTQGLTAPLTVAASFAAILHLPINYFFATYLKLGVKGIALATGLNSINMILGLVLYLLLSEKPLKPWEGATVLSSFRDWRPLLTLALPSCISVCLEWWCYEIMLFLCGLLSNPQTTVATMGVLIQTTGFLYVFPFSLSAALTTQIGHSLGAGQPLRAQSTATIGLFIAFASGVSAFVFLMFVRKVWGKLFTTETQIVDMVTTILPILGLCEIGNWPQTAACGILSGTARPYVGARINLCAFYLIGLPVAVFAAFMHRYQLRGLWFGMLAAQISCFGMMVYTLIQTDWGHQSKRAEQLARTTDDEENVNDDEECGLLNSDL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01180 509 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 476 - -
Viun5g01180 509 NCBIfam MATE family efflux transporter 55 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g01180 509 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g01180 509 Pfam MatE 55 215 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g01180 509 CDD MATE_eukaryotic 45 482 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01180 Viun-Chr5 8304641 8308789 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01180 K03327 - gmx:100816717 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01180 5 8304641 8308789 Viun10g01432 10 28670288 28676980 PCT