Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01158 ATGGGCACAAAACTGAGTCTTTTGTTGTGTGTTTGGGTTTTGCTGTTGGGGTGTACTGTGGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAGAGTGACTGCACCCACATCTTTGAAGGGGACATATGAATGTGCAATTGGAAATTTTGGGGTTCCCAAGTATGGAGGAACATTGGTTGGCTCTGTGCTATACCCAAAGGTGAATCAGAAGGGGTGCCTCAACTTCACTGATGTCAATTTTCAGTCCAAGCCAGGAGGGTTCCCCACTTTTCTACTTGTGGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCCGAAGAAGGGAAAGGTACAGATGATGATTACGTGGAAAACATTAGTATTCCGTCTGTTCTTATCAGCAAATCCTTGGGGGACAGCATCAAAAAAGCTCTCTCTGATGGGGAAATGGTTAACATGAATCTTGATTGGACAGAAGCTCTTCCACATCCTGATGATAGAGTTGAGTATGAGTTATGGACAAATAGCAACGACGAGTGTGGACAAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAGGGGGTAGCTCAGCTGCTTGAGCAGAAAGGGTTCACTCAGTTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTAAGCAAACAGTGCAAGTCTCAATGCATAAACAATGGAAGGTACTGTGCTCCAGATCCGGAGCAAGATTTCAGTAGTGGGTATGATGGCAAAAATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAGTGGTGGGACTATGTTACCGATTTTTCAATTCGTTGCCCCATGAAAGAGAAGAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAGGACTGTGTTGGTGATCCCCATGCAGATGTTGAAAATCCTGTTCTTAAGGCTGAGCAGGATGCACAGATTGGCAAAGGCACTCGTGGTGATGTGACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCTAAACCCGCTGTTCTCAAGGCACTCTGTGCAGGCTACCTAGAAACCACTGAACCATCGGTTTGCTTAACTCCAGAAATGGAAACAAATGAGTGTTTGGTAAACAATGGTGGTTGTTGGAAAGAAAAATCCTCTAACATTACTGCTTGCCGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTGTTGTACAAAATGTGAAATTTGTTGGAGATGGATATACTCACTGTGAAGCATCTGGAACCTTGAGCTGTGACTTCAACAATGGTGGTTGTTGGAAGGGATCTCAAGGTGGCAGGGCTTATACCGCTTGTCTGGATGACTACAAAAAAGGTTGTACATGTCCTCCTGGGTTCAAAGGTGATGGAGTCCAGTCATGTGAAGATATTGATGAGTGCCAAGAGAAAACAGCCTGCCAATGCCCAAGTTGCAAATGCAAAAACACCTGGGGAAGTTATGAGTGCAAATGTGGTAGTGGTTTGTTCTATTCACGAGAAAATGACACATGTCTAGGTGCATATTCTGCTTCAGGGGTGAGCATCTGGATGATTATCCTCATCGTGGTTGTTGCTGCTTCTGGAGGTTATGCATTTTACAAGTACAGAATTCAGAGATATATGGATTCAGAAATACGGGCAATTATGGCACAATACATGCCTTTGGATAATCAACCTGAGGAATCTAATCAAGTTCATCACAATATCTAG 1860 0.4312 MGTKLSLLLCVWVLLLGCTVGRFVVEKNSLRVTAPTSLKGTYECAIGNFGVPKYGGTLVGSVLYPKVNQKGCLNFTDVNFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKGTDDDYVENISIPSVLISKSLGDSIKKALSDGEMVNMNLDWTEALPHPDDRVEYELWTNSNDECGQKCDSLINFLKDFKGVAQLLEQKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSSGYDGKNVVVQNLRQACFYKVANESGKPWQWWDYVTDFSIRCPMKEKKYTEECSDQVIKSLGADLKKIKDCVGDPHADVENPVLKAEQDAQIGKGTRGDVTILPTLVINNRQYRGKLSKPAVLKALCAGYLETTEPSVCLTPEMETNECLVNNGGCWKEKSSNITACRDTFRGRVCECPVVQNVKFVGDGYTHCEASGTLSCDFNNGGCWKGSQGGRAYTACLDDYKKGCTCPPGFKGDGVQSCEDIDECQEKTACQCPSCKCKNTWGSYECKCGSGLFYSRENDTCLGAYSASGVSIWMIILIVVVAASGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEESNQVHHNI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01158 619 Pfam PA domain 61 160 IPR003137 -
Viun5g01158 619 SMART egfca_6 513 555 IPR001881 GO:0005509
Viun5g01158 619 FunFam Vacuolar-sorting receptor 1 20 183 - -
Viun5g01158 619 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
Viun5g01158 619 FunFam vacuolar-sorting receptor 1 406 462 - -
Viun5g01158 619 CDD EGF_CA 513 544 - -
Viun5g01158 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Viun5g01158 619 Gene3D Laminin 467 551 - -
Viun5g01158 619 Gene3D - 20 183 - -
Viun5g01158 619 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Viun5g01158 619 Gene3D Laminin 407 452 - -
Viun5g01158 619 SUPERFAMILY PA domain 91 170 IPR046450 -
Viun5g01158 619 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 9 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01158 Viun-Chr5 8132526 8138286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01158 4 619 Miscellaneous Gene Families AT3G52850 70.787 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01158 - - gmx:100807514 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01158 5 8132526 8138286 Viun5g01158 5 8132526 8138286 ECH
Viun5g01158 5 8132526 8138286 Viun10g00048 10 276002 281265 PCT