Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00048 ATGACAATGAGAACAAAGCAAAGTTTTTTGTGGTTTGTATGGATTTTGCTTTGTGGGTCTTGTGTGGGATCGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCCCCAAATTCATTGAAAGGTATATATGAATGTGCAATTGGAAATTTTGGAGTTCCCAAATATGGAGGAACCATGATTGGCTCAGTGGTGTACCCCAAGTCCAATCAGAACGGTTGTAAACCCTTTGATTCATCGTTGAGTTCCAAGCCCGGAACCTTCCCCAGCTTTGTTCTTATTGATCGAGGAGACTGCTACTTCACTTTAAAGGCGTGGAATGCACAGAAAGGTGGAGCAGCGGCCATTCTTGTTGCAGATGATAGGACAGAACCATTGATCACCATGGACACACCTGAAGAAGGAACTGGTTCCAGCAAAGACGATTATATTGAGAAGATCAACATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAAAATCAAGAGTTCTCTCTCTAGTGGGGAAATGGTTAATGTAAATCTTGATTGGAGAGAGGCTCTTCCTCACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATTAACTTTGTCAAGGGTTTTAAAGGGGCAGCTCAACTACTAGAGCAGAAAGGGTTTGCAAAGTTTACCCCTCACTATATAACTTGGTATTGTCCAGAAGCATTTATATTGAGCGAACAGTGCAAGTCCCAGTGCATAAATAATGGAAGATACTGTGCACCAGATCCTGAGCTTGATTACAAAAGAGGGTATAGTGGTAGAGATGTTGTTATCCAAAACTTACGTCAAGTATGCTTCTTTAGAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTATACTGAAGAATGCTCAGACCAAGTTATCAAATCTCTTGGTATCGACTTGAAGAAAGTTAAAGATTGTGTTGGAGATCCTGATGCAAATGTCGATAACCCTGTTCTCAATAATGAACAGGATTCACAGATTGGTAACGGCGATCGTGGAGATGTTACTATACTACCTACCCTTATTATAAACAACAGACAATATAGAGGTAAGCTATCAAAAGCAGCAGTACTCAAGGCAATATGTTCTGGCTTCCAAGAGACTACTGAGCCATCAATTTGTTTAACTCCAGACATGGAAACCAACGAGTGTTTGCAGAACAATGGTGGTTGTTGGCAGGACGCTACTGCTAACATTACTGCGTGCAGGGACACTTTCAGAGGAAGAGTATGTGAATGCCCAGTTATACAAAATGTGCAGTTTGTTGGTGATGGATATACCCATTGTGAAGCTACAGGGGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGAAACCAGAGGTAGCACGACTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCAGGGGAGATGGAGTCAGAACCTGTAGAGATGTGGATGAATGCAAGGAGAAATTGAACTGCCAGTGCCCAGAATGTCAATGCAAAAATACTTGGGGAAGTTATGAATGCTCATGTACTGATGGTTTGTACTACACGCGAGAAAATGATATGTGCATTGGAAAATATGCTGCTTCAGTGGCCGGTGGGGGCATTGTTTGGATGGTTATCATGATATTGGCTGTTGCTGGTGCTGGGGGGTATGCATTTTACAAGTATAGAATCCGGAGATACATGGACTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGATACTTCTATTCAAACTCAAGGAGATGTCTAG 1875 0.424 MTMRTKQSFLWFVWILLCGSCVGSFVVEKNNLKITSPNSLKGIYECAIGNFGVPKYGGTMIGSVVYPKSNQNGCKPFDSSLSSKPGTFPSFVLIDRGDCYFTLKAWNAQKGGAAAILVADDRTEPLITMDTPEEGTGSSKDDYIEKINIPSALISKSLGDKIKSSLSSGEMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKGFKGAAQLLEQKGFAKFTPHYITWYCPEAFILSEQCKSQCINNGRYCAPDPELDYKRGYSGRDVVIQNLRQVCFFRVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGIDLKKVKDCVGDPDANVDNPVLNNEQDSQIGNGDRGDVTILPTLIINNRQYRGKLSKAAVLKAICSGFQETTEPSICLTPDMETNECLQNNGGCWQDATANITACRDTFRGRVCECPVIQNVQFVGDGYTHCEATGALRCAINNGGCWKETRGSTTFSACIDDHTKGCKCPPGFRGDGVRTCRDVDECKEKLNCQCPECQCKNTWGSYECSCTDGLYYTRENDMCIGKYAASVAGGGIVWMVIMILAVAGAGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPDTSIQTQGDV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00048 624 Gene3D - 22 185 - -
Viun10g00048 624 CDD EGF_CA 515 546 - -
Viun10g00048 624 Gene3D Laminin 409 456 - -
Viun10g00048 624 FunFam Vacuolar-sorting receptor 1 22 185 - -
Viun10g00048 624 FunFam vacuolar-sorting receptor 1 408 464 - -
Viun10g00048 624 SUPERFAMILY PA domain 91 171 IPR046450 -
Viun10g00048 624 SMART egfca_6 515 557 IPR001881 GO:0005509
Viun10g00048 624 Gene3D Laminin 469 553 - -
Viun10g00048 624 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Viun10g00048 624 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 7 617 - -
Viun10g00048 624 Pfam PA domain 62 162 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00048 Viun-Chr10 276002 281265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00048 3 621 Miscellaneous Gene Families AT2G30290 66.987 0.0 923
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00048 - - gmx:100815266 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01158 5 8132526 8138286 Viun10g00048 10 276002 281265 PCT