Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01064 ATGGCCACACTCAAAACCCTTTGCTTCAGAGCTGCCACCTTCCCCGATTGCCCCTCCAATGTCACCAACAATAAAAGCACCAGGAGCTCAAACTGGAAGCCTCCACAAGCAGCTGTGAAATCTAGTTTGCACCTCCCAATGCGCAGCTTTGAGTTGAAAAATAGGACTTCCCCAGAGGACATAAAGTGTCTGAGGTTGATAACTGCCATCAAAACTCCATACCTACCTGATGGGCGATTTGATCTTGAAGCATACGATGACTTGGTGAATATGCAGATTGGAGAAGGGGTCGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGACAATTAATGAGCTGGGAGGAGCACATAATGCTCATTGCTCATACAGTTAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACTGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCGCTTCACATAAACCCCTACTACGGAAAAACCTCCTTGGATGGCATGGTTGCTCACTTTCAAAGTGTGCTTCCGATGGGACCCACAATAATCTATAATGTGCCTTCGCGGACTGGTCAAGACATTCCTCCACATGTAATTGAAACCTTAGCTGAAAGTTCTAACTTAGCTGGTGTCAAGGAGTGTGTGGGAAATGATCGGATCAAGCAGTATACAGACAATGAGATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGATTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTGGTTCCTGGTCTAATGCGGGAACTAATGTATGGTGTAAATCCTAGGTTAAATTCTAAGCTCCTACCTCTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGGTTGAACACTGCTCTTGCTCAACTTGGGGTTGTCAGGCCCGTTTTTAGGCTACCATTTGTACCTCTCTCTGTGGAGAAAAGGATAGAATTTGCCGATATAGTGAAGGCAATTGGCCGAGAGCATTTTGTTGGAGATAAAGATGTTGAGGTTCTTGATGACGAAGACTTTTTCTTGGTCAGTCGTTATTAA 1089 0.4518 MATLKTLCFRAATFPDCPSNVTNNKSTRSSNWKPPQAAVKSSLHLPMRSFELKNRTSPEDIKCLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGEGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLPMGPTIIYNVPSRTGQDIPPHVIETLAESSNLAGVKECVGNDRIKQYTDNEIVVWSGNDDQCHDARWDYGATGVISVASNLVPGLMRELMYGVNPRLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLSVEKRIEFADIVKAIGREHFVGDKDVEVLDDEDFFLVSRY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01064 362 SUPERFAMILY Aldolase 66 337 - -
Viun5g01064 362 PANTHER DIHYDRODIPICOLINATE SYNTHASE 51 346 IPR002220 GO:0016829
Viun5g01064 362 CDD DHDPS 65 334 IPR005263 GO:0008840|GO:0009089
Viun5g01064 362 Gene3D Aldolase class I 58 362 IPR013785 -
Viun5g01064 362 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Viun5g01064 362 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 66 335 IPR005263 GO:0008840|GO:0009089
Viun5g01064 362 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Viun5g01064 362 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Viun5g01064 362 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Viun5g01064 362 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Viun5g01064 362 Pfam Dihydrodipicolinate synthetase family 64 336 IPR002220 GO:0016829
Viun5g01064 362 Hamap 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 62 336 IPR005263 GO:0008840|GO:0009089
Viun5g01064 362 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Viun5g01064 362 SMART DHDPS_2 62 338 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01064 Viun-Chr5 7369998 7373600 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01064 K01714 - gmx:100788930 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01064 5 7369998 7373600 Viun5g01064 5 7369998 7373600 ECH
Viun5g01064 5 7369998 7373600 Viun10g01667 10 31588988 31591296 PCT