Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01049 ATGGGGTTGTTTTCTGGGATTTTTCTGGGGATGGTATTCGGCGTGGCATTGATGGCAGCGTGGCAACGCATGATGTCGTACCGTAGCGCCAAGAGAATTTCAAAGGCAGCTGATATTAAGCTCCTTGGGTCCCTCAACAGAGACGATTTAAGGAAAATTTGTGGTGACAATTTTCCTGATTGGATATCTTTTCCAGTATATGAGCAGGTCAAATGGCTAAACAAGCAGCTATCCAAACTTTGGCCATTTGTTGCAGATGCAGCAACATTGGTGATAAGAGAATCTGTTGAGCCGCTATTGGAAGAGTACAGACCTCCTGGCATTACTTCATTGAAGTTCAGCAAGCTCTCCCTTGGAAATGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGACTCTTAAAAAAGGTCAAATAATTATGGACATTGATTTTCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCTGCGCTTGTTGCATCAATTCCTATTCAGTTGAAGGACCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCATGCATTTCTGCTGTTGTTGTTGCCCTACTCGCTGAGCCAAAGCCTAGAATTGATTACACTTTGAAGGCTGTTGGTGGAAGTTTGACAGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACCGACATGCTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGTATACCTGTTGATACTAGTGACCTGGAGCTTAAACCCCAGGGAACACTTAAAGTGAAGGTAGTGAAAGCCAATGATCTGAAGAATATGGAAATGATTGGGAAGTCCGATCCATATGTAGTGTTGCATATTCGGCCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAACGAGGAATTTGAGTTGATTGCAGAGGACAAGGAGACCCAATCACTCATTGTTGAGGTTTTTGATGAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAATTACCACTTATTGGCCTGAAAGCAGAAACTGAAAAGGAGTTTGAGTTGAGGCTGCTGCCATCACTTGATACACTGAAAGTGAAAGACAAAAAGGATCGAGGAACCTTGACATTAAAGATCTTTTATCACGAATTCAACAAGAAAGAACAATTGGTTGCACTAGAGGCAGAGAAAAAGATACTAGAAGAAAGGAAGAAACTTAAAGAGGAGGGAGTTATAGGAAGTACAATGGATGCCATAGATGGAGCAGCATCGGTGGTTGGTTCCGGTGTTGGAATGGTGGGTTCTGGAGTTGTCTCTGGTGCAGGACTTGTTCGTAGTGGTGTTGTTTCTGGTGCTGGATTTGTGGGGAGTGGTGTTACTTCTGGTGCTGGATTTGTGGGGAGTGGTGTTACTTCTGGTGCTGGACTTGTGGGGAGTGGTGTTGCTTCTGGTGCTGGATTTGTGGGTAGTGGTGTTGCTTCTGGTGCTGGACTTGTGGGTAGCGGAGTTTCTTCTGGAGCTGGGCTTGTTGGCGGTGGCATTGGTGCTGGACTCGGCGCTGTTGGCAGTGGATTCGGCGCTGTTGGCAGTGGAATCAGCAAAGCAGGGAAGTTCATGGGAAGGACCATCACCGGACAAGGGGGAGCCAAAAGGAGTGGTTCATCTACTCCGGTCAATGCGGAGGAGGCTGGTGGTGGTGCAAAACCTCTGCAACAGTAA 1743 0.4509 MGLFSGIFLGMVFGVALMAAWQRMMSYRSAKRISKAADIKLLGSLNRDDLRKICGDNFPDWISFPVYEQVKWLNKQLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQTLKKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSDLELKPQGTLKVKVVKANDLKNMEMIGKSDPYVVLHIRPLFKVKTKVIDNNLNPVWNEEFELIAEDKETQSLIVEVFDEDIGQDKRLGIAKLPLIGLKAETEKEFELRLLPSLDTLKVKDKKDRGTLTLKIFYHEFNKKEQLVALEAEKKILEERKKLKEEGVIGSTMDAIDGAASVVGSGVGMVGSGVVSGAGLVRSGVVSGAGFVGSGVTSGAGFVGSGVTSGAGLVGSGVASGAGFVGSGVASGAGLVGSGVSSGAGLVGGGIGAGLGAVGSGFGAVGSGISKAGKFMGRTITGQGGAKRSGSSTPVNAEEAGGGAKPLQQ 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01049 580 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Viun5g01049 580 CDD SMP_SYT 59 248 - -
Viun5g01049 580 Gene3D C2 domain 259 418 IPR035892 -
Viun5g01049 580 SMART C2_3c 265 362 IPR000008 -
Viun5g01049 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Viun5g01049 580 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 425 IPR045050 GO:0008289
Viun5g01049 580 MobiDBLite consensus disorder prediction 551 580 - -
Viun5g01049 580 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Viun5g01049 580 FunFam synaptotagmin-4 isoform X1 259 417 - -
Viun5g01049 580 Coils Coil 391 418 - -
Viun5g01049 580 PRINTS C2 domain signature 281 293 IPR000008 -
Viun5g01049 580 PRINTS C2 domain signature 328 336 IPR000008 -
Viun5g01049 580 PRINTS C2 domain signature 306 319 IPR000008 -
Viun5g01049 580 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Viun5g01049 580 Pfam C2 domain 264 358 IPR000008 -
Viun5g01049 580 CDD C2 266 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01049 Viun-Chr5 7208870 7218860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01049 249 350 Lipid Metabolism Gene Families AT3G61300 34.951 6.89e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01049 - - vun:114183274 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01049 5 7208870 7218860 Viun10g01698 10 31979479 31991177 PCT