Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01698 ATGGGTTTGTTTTCTGGGATTTTCATGGGGTTGGTGTTCGGCATCGCATTGATGGCTGGATGGGCACGCATGATGAAGTACCGAAGCGCTAAAAGAATTGCAAAGGCAGCTGACATTAAACTCCTTGCATCCCTTAACAGAGAAGATTTAAAGAAAATTTGTGGTGAAAATTTGCCCGAGTGGATATCATTTCCTGTATATGAACAGGTGAAATGGCTAAACAAGAAACTGACCAAACTTTGGCCATTTGTAGCAGAAGCTGCAACTTTGGTGATCAGAGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCAACTGGAATTACTTCATTGAAGTTCAGCAAACTCTCACTTGGAAATGTGGCCCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTACCAAAGGTCAAATCATAATGGATATTGATTTCCGTTGGGGTGGTGATCCTAGTATTATTTTGGCTGTTGAGGCTGCACTTGTTGCATCAATCCCTATTCAGTTGAAGGATCTACAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCGTGCATTTCTGCTGTTGTTGTAGCTCTACTTGCTGAGCCAAAGCCAAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTAACAGCTATTCCTGGAATCTCAGATATGATTGATGATACTGTGAATTCAATTGTTACTGACATGCTTCAATGGCCCCATAGGATTGTGGTTCCACTTGGTGGTATTCCTTTTGATATCAGTGATCTAGAGCTTAAACCCCAAGGAAAACTTTCAGTGACTGTAGTGAAAGCGACTGCTTTGAAGAATATGGAAATGATTGGAAAGTCAGATCCTTATGTAGTTGTGTATATTCGACCATTGTTCAAGTATAAAACCAAAGTTGTTGATAACAACTTGAATCCTACTTGGAATGAGAGATTTGAGCTGATTGCAGAAGACAAGGAGACCCAATCACTCATTCTAGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAGTAGTACAGGTACCCCTTAATGATCTAGACGCACAAACTGAAAAGGAGATGGAGTTGAGGCTGCTGGCATCACTTGATACACTGAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTGTTATACTATCAGTTTAACAAGGAAGAACAACTGGCTGCACTAGAAGCTGAGAAAAAGATACTAGAAGAAAGGAAGAAACTGAAAGAAGCAGGAGTGATAGGAAGCACAATGGATGCGCTAGACGGAGCAGTATCAGTGGTAGGGTCTGGCGTTGGACTGGTTGGTGCCGGTGCCGGTCTTGTGGGAAGTGGCGTTGTGGCTGGTGCCGGGCTAGTTGGCAGTGGCATTGGAAGTGGTTTTGGAGCTGTTACCAGTGGATTGAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGCCATAGTGGCTCCAAAAAGAGTGGCTCTTCAACTCCAGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCTCTTTGA 1542 0.43 MGLFSGIFMGLVFGIALMAGWARMMKYRSAKRIAKAADIKLLASLNREDLKKICGENLPEWISFPVYEQVKWLNKKLTKLWPFVAEAATLVIRESVEPLLEEYRPTGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPFDISDLELKPQGKLSVTVVKATALKNMEMIGKSDPYVVVYIRPLFKYKTKVVDNNLNPTWNERFELIAEDKETQSLILEVFDKDIGQDKRLGVVQVPLNDLDAQTEKEMELRLLASLDTLKVKDKKDRGTLTIKVLYYQFNKEEQLAALEAEKKILEERKKLKEAGVIGSTMDALDGAVSVVGSGVGLVGAGAGLVGSGVVAGAGLVGSGIGSGFGAVTSGLSKAGKFMGRTITGHSGSKKSGSSTPVNNAQENGGGAKPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01698 513 CDD C2 266 365 - -
Viun10g01698 513 PRINTS C2 domain signature 328 336 IPR000008 -
Viun10g01698 513 PRINTS C2 domain signature 306 319 IPR000008 -
Viun10g01698 513 PRINTS C2 domain signature 281 293 IPR000008 -
Viun10g01698 513 MobiDBLite consensus disorder prediction 487 505 - -
Viun10g01698 513 CDD SMP_SYT 59 248 - -
Viun10g01698 513 Gene3D C2 domain 259 417 IPR035892 -
Viun10g01698 513 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Viun10g01698 513 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Viun10g01698 513 FunFam synaptotagmin-4 isoform X1 259 417 - -
Viun10g01698 513 Pfam C2 domain 264 361 IPR000008 -
Viun10g01698 513 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 392 IPR035892 -
Viun10g01698 513 MobiDBLite consensus disorder prediction 485 513 - -
Viun10g01698 513 SMART C2_3c 265 362 IPR000008 -
Viun10g01698 513 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 423 IPR045050 GO:0008289
Viun10g01698 513 Coils Coil 391 418 - -
Viun10g01698 513 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01698 Viun-Chr10 31979479 31991177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01698 256 363 Lipid Metabolism Gene Families AT3G61300 32.110 3.53e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01698 - - gmx:100777838 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01698 10 31979479 31991177 Viun10g01698 10 31979479 31991177 ECH
Viun5g01049 5 7208870 7218860 Viun10g01698 10 31979479 31991177 PCT