Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00968 ATGACAGAGCCAAAACCTAGGTATGCTGTTGTTACTGGGGCAAACAAAGGGATAGGGTTAGAGAGTGTTAACCAGTTGGCCTCAAATGGAGTGAAGGTGGTGCTCACTGCCAGAGATGAGAGAAGAGGCTATGAAGCCATTGAGATTTTGAAAGAATGTGGTCTCTCTGAGTTGGTGCTTTTTCATCAGCTTGATGTCACTCACTCTGCTAGTATTTATTCACTAGTGGACTTTGTCAAGACACAGTTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGTGTCAATCCATATGAAATGCAAGGATCAACAATTAACTGGAGGGAACTTACTCAAACTTATGAAATGGCAGAAAAGTGTGTAAGAACAAACTACTATGGTGCAAAGGAAACAACTGAGGCATTTCTTCCCCTTTTGAAACTATCCAACTCACCTAGGATTGTTAATGTTTCTTCCCAAGCAGGGTTGTTAAAGGGGATTGCAAACAAAATGGCAAAAGGGGTGTTTGATGATGCTGAAAATCTTACAGAAGATAGAATAGATGAGGTACTGAAAGAGTTTATGAAAGACTTTGAAGAAGGTTCATTCAGAAACAAAGGTTGGCCAACCTTCTTATCTGCCTATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTCTAGCAAAGAAGTATCCAAACTTCTGCATCAATTGTGTGTGTCCTGGTTTTGTAAAAACAGACATAAACAGAAACACTGGTTTCTTATCTGTTGATCAAGGTGCTGCTAGTGTTGTGAGATTAGCATTGCTTCCCAATGGTTCCCCTTCTGGCTTCTTCTATAGTAGGCAAGAAATGTCAAATTATTGGTATGGAGTCCTCAGCATTGACATTGATGAAATTCATTGCTGCAATAGCATGGCAGCAAGGGATAGCAGTCAGAAGCCATTTCCTACAGCTGCAATGTTGAGCATCCACATCCACCGTGTATTTGTACAGAAATCAGGTATTTGTATAGAAATCAGGTATTTGTACAGTAGAGATACCTTGGAGCTATTGCCCTTGCTTTACGAGCTGTTGATATTGACACATGTGTATTCCATTTTCTTAAAGTCCTTTGTCTTACATCATTTATCTTTAGATTTGGATTCTCTATTAGAGTTTGGTCCAAGGCATAGTTTCCACTTCAATTTCACCTCCCACTTCAACATCACTATTCAGACCACTGGCATCCCCAATCTCTACTTCAGCAGCCTCTTCATGGGCTTCTACTTCACCACCGTGGTGGACAATAACATCGAACCTATCATCACTCATTGCCCTAAAAACAAGCTCATACACTTCATTATATTTGGCACTTGGTTTTGGAGAAAACCACAAACATTATTAACACATCCGTTGAGTTTCAGCATTTCTATGGCAGAGCCAAAACTAAGATACGCTGTTGTTACTGGAGCAAATAAAGGAATAGGGTTTGAGACAGTTAAACAGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCACAGCCAGAGATGAGAACAGAGGCCAAGAAGCCATTGGGAAATTGAAAGACTATGGTCTCTCTGATTTGGTGACTTTTCACCAGCTTGATGTCACTCACTCTGCTAGTATTGATTCTCTAGCAGAGTATGTTAAGACACAGTTTGGAAAACTTGATATTTTGGTGAACAATGCAGGAATAAGTGGAGTCAATCTGGATGAAGTGGAGGAGGGATCAAAATTTAGCTGGGAGGAACTCACTCAAACTTATGCTATGGTTGAAGAGTGCCTAACAACAAACTACTATGGTGCAAAGAAAGTAACTGAGGCATTTCTTCCCCTTCTGCAATTATCCAACTCTCCTAGGATTGTGAATGTTTCCTCCCAAGGAGGATTGTTAAAGCTCATAGCAAATGAATGGGCTAAAGGAGTGCTTAATGATGCTGAAAATCTTACAGAAGAGAAAATAGATGAGGTGCTCAAAGAGTTTATAAAAGACTTCAAAGAAGATTCCTTAAAAACTAAAGGCTGGCCAACCTTCTTGTCTGCCTATATGGTCTCAAAAGCAGCCATGAATTCATACACAAGGATTCTAGCAAAGGAGCATCAAAACATGATTATTAACAGTCTGTGCCCTGGTTTTGTGAAAACAGACATCAACAAAAACTCTGGCATCTTATCAGTTGATGAAGGTGCTGCTAGTGTTGTGAGATTGGCACTTTTGCCTGATGGTTCCCCTTCTGGCCTTTTCTATGTTAGGCAAGAATTGTCCAACTTTTAA 2271 0.4033 MTEPKPRYAVVTGANKGIGLESVNQLASNGVKVVLTARDERRGYEAIEILKECGLSELVLFHQLDVTHSASIYSLVDFVKTQFGRLDILVNNAGISGVNPYEMQGSTINWRELTQTYEMAEKCVRTNYYGAKETTEAFLPLLKLSNSPRIVNVSSQAGLLKGIANKMAKGVFDDAENLTEDRIDEVLKEFMKDFEEGSFRNKGWPTFLSAYMVSKAAMNSYTRILAKKYPNFCINCVCPGFVKTDINRNTGFLSVDQGAASVVRLALLPNGSPSGFFYSRQEMSNYWYGVLSIDIDEIHCCNSMAARDSSQKPFPTAAMLSIHIHRVFVQKSGICIEIRYLYSRDTLELLPLLYELLILTHVYSIFLKSFVLHHLSLDLDSLLEFGPRHSFHFNFTSHFNITIQTTGIPNLYFSSLFMGFYFTTVVDNNIEPIITHCPKNKLIHFIIFGTWFWRKPQTLLTHPLSFSISMAEPKLRYAVVTGANKGIGFETVKQLASNGVKVVLTARDENRGQEAIGKLKDYGLSDLVTFHQLDVTHSASIDSLAEYVKTQFGKLDILVNNAGISGVNLDEVEEGSKFSWEELTQTYAMVEECLTTNYYGAKKVTEAFLPLLQLSNSPRIVNVSSQGGLLKLIANEWAKGVLNDAENLTEEKIDEVLKEFIKDFKEDSLKTKGWPTFLSAYMVSKAAMNSYTRILAKEHQNMIINSLCPGFVKTDINKNSGILSVDEGAASVVRLALLPDGSPSGLFYVRQELSNF 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00968 756 Gene3D - 471 756 - -
Viun5g00968 756 Gene3D - 2 286 - -
Viun5g00968 756 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 272 IPR036291 -
Viun5g00968 756 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 476 753 - -
Viun5g00968 756 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 476 742 IPR036291 -
Viun5g00968 756 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 211 230 IPR002347 -
Viun5g00968 756 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Viun5g00968 756 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Viun5g00968 756 CDD carb_red_PTCR-like_SDR_c 476 756 IPR045313 GO:0016616
Viun5g00968 756 CDD carb_red_PTCR-like_SDR_c 7 286 IPR045313 GO:0016616
Viun5g00968 756 FunFam (+)-neomenthol dehydrogenase 2 286 - -
Viun5g00968 756 PRINTS Glucose/ribitol dehydrogenase family signature 681 700 IPR002347 -
Viun5g00968 756 PRINTS Glucose/ribitol dehydrogenase family signature 612 628 IPR002347 -
Viun5g00968 756 PRINTS Glucose/ribitol dehydrogenase family signature 477 494 IPR002347 -
Viun5g00968 756 PRINTS Glucose/ribitol dehydrogenase family signature 553 564 IPR002347 -
Viun5g00968 756 PRINTS Glucose/ribitol dehydrogenase family signature 700 717 IPR002347 -
Viun5g00968 756 FunFam (+)-neomenthol dehydrogenase 471 756 - -
Viun5g00968 756 Pfam short chain dehydrogenase 477 631 IPR002347 -
Viun5g00968 756 Pfam short chain dehydrogenase 8 162 IPR002347 -
Viun5g00968 756 Pfam short chain dehydrogenase 677 720 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00968 Viun-Chr5 6355608 6365911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00968 478 716 Miscellaneous Gene Families AT2G29150 30.165 5.86e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00968 K15095 - vun:114183121 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00968 5 6355608 6365911 Viun5g00968 5 6355608 6365911 ECH
Viun5g00968 5 6355608 6365911 Viun10g01839 10 33371922 33374334 PCT
Viun10g01837 10 33345959 33362948 Viun5g00968 5 6355608 6365911 PCT