Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01837 ATGGGAGAGGCAACAGAAAGGTATGCAGTTGTGACAGGAGCAAACAAAGGTATTGGATTAGAGATAGTTAAGCAATTAGCCTCAGCAGGGATCAAGGTGGTACTCACAGCAAGAAATGAAGAGAGGGGTCTGCATGCAATGGAAAAAATAAAAGCCTCAGGTCTATCTCACCTTGTGATGTTTCATCTTCTGGATGTGGCTGATGCAACAAGTGTAGCTTCTCTCGCTGATTTTATCAAATCAAAGTTTGGAAAACTTGATATTCTGGTTAACAATGCCGGGATTGGTGGAACAGTAACCAAAGACGTTGGTTTATTGCCTTCAGTTCTCCTTAAGCGTGGGGCTGTATCAGAAGAAGAAGGAACAAAGGCAATGACTCAAACATATGAGTTAGCTGAAGAATGCTTGCAGATAAATTACTATGGCACTAAAATAACTGTAGAATCACTCATGCCCCTCCTCCAATTGTCTGATTCACCAACAATTGTGAATGTATCATCCATTCTGGGGCAGTTAGAGAGCTTTCCTAAGGAATCATGGGCAAGAGGAGTGTTGAGTGATGCTGATAACCTCACAGAAGAGAAAATAGATGAAATAGTGAAGAAGTTTCTGAGTGATTTCAAAGAAGGTTCATTAGAGAGTAAAGGGTGGCCAAGGTATCTAGGAGCCTATATTGTGTCAAAAGCTGCTATGAATGGATACACAAGAATCCTTGCAAAGAAAAACCCATCATTCTGCATAAACAGTGTTTGTCCTGGTTATGTGAAGACAGATATAACTTCAAACACTGGGCTTCTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAGGCTTGCACTGCTTCCTAATGGCTCTCCATCTGGTCTCTTCTATTACAGAACTGATGTCGCTTCCTTTTGA 900 0.4144 MGEATERYAVVTGANKGIGLEIVKQLASAGIKVVLTARNEERGLHAMEKIKASGLSHLVMFHLLDVADATSVASLADFIKSKFGKLDILVNNAGIGGTVTKDVGLLPSVLLKRGAVSEEEGTKAMTQTYELAEECLQINYYGTKITVESLMPLLQLSDSPTIVNVSSILGQLESFPKESWARGVLSDADNLTEEKIDEIVKKFLSDFKEGSLESKGWPRYLGAYIVSKAAMNGYTRILAKKNPSFCINSVCPGYVKTDITSNTGLLTVEEGAASPVRLALLPNGSPSGLFYYRTDVASF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01837 299 Gene3D - 3 299 - -
Viun10g01837 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Viun10g01837 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 296 - -
Viun10g01837 299 FunFam (+)-neomenthol dehydrogenase 2 299 - -
Viun10g01837 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Viun10g01837 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Viun10g01837 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Viun10g01837 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Viun10g01837 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Viun10g01837 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Viun10g01837 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Viun10g01837 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Viun10g01837 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01837 Viun-Chr10 33345959 33362948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01837 3 260 Acyl Lipid Metabolism Gene Families AT1G63380 27.239 1.63e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01837 K15095 - gmx:102663482 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01837 10 33345959 33362948 Viun10g01837 10 33345959 33362948 ECH
Viun10g01837 10 33345959 33362948 Viun5g00968 5 6355608 6365911 PCT