Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00917 ATGGCGAAGGAAGAAGTGTTTGAGTTTCTCGGGAACGTTCCTCTGCTACAGAGGCTTCCTGGCTCGTCTGTACGGAAGATATCTGAGCTTGTAATTCCCAAATACTATGAGCCGAGAGAGTATGTTGTTCGTGAGGGGGAACGTGGGGATGGTCTGTACTTCATCTGGGAAGGAGAGGCAGAGGTTGTTGGCTCTGTTAGTGCTGATGATCATCGAGAGTTTCAATTGAAAAGATATGACTACTTTGGTTTTGGGTTATCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGCTATCATGCTTGGTACTGCCCCATGAGCATTCAGCATTGCTGCAACCGAAGTCTATCTGGAGTGCAGAAAAATCTGTTGATACATGCTCACCTGTGGAGCATATACTGCATTTGGAACCTATAGAGGTAGATATCTTCCGAGGAATCACTCCTCCAGATGCTCCAAAATTTGGAAAAGTATTTGGTGGACAAATAGTTGGACAGGCACTGGCTGCAGCATCAAAATCTGTCGATTGTCTTAAAGTTGTTCATAGTTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACATACCCATTATATATCAAGTTAGCCGTCTCCGTGATGGGAAGAGTTTTGCTACTAGGAAAGTGGATGCAATTCAAAAGGGAAACGTCATATTCACTTTGCTGGCTTCATTTCATAAGGAGGAATTGGGGTTTCAGCACCAGGAAGTGCATATCTCATCAGTCCCTACACCAGATAAGCTTTTGTCGTTGGAAGAGCTTCGGGAGCTACGTCTAACCGACCCTCGCCTTCCAAGAACTTACCGGAACAAGGTTGCTGCAGTTGAATTCATTCCCTGGCCCATAGAGATACGGTTCTGTGAACCTAGAGCTTCAACAAATCAGACCAAATCTCCCCCTAGTTTGAGATACTGGTTCAGAGCAAGGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGTGTGGTAGCATATACTTCTGATCTAATCTTTCTTCAAGTGAGTTTGAATCCCAACCGTAGGAAGGGCATGAAGGCACGCGCTGTGAGTCTGGACCACTCCATGTGGTTTCACAGACCTGTAAGAGCCGATGACTGGGTGCTATTTGTGATCTTCAGTCCTACTTCCTTTAACGCCCGTGGCTATGTTACTGGCCAAATGTTCAATCAAAAGGGAGAGCTTCTTGTATCAGTGGTTCAAGAAGGTCTAATGAGGGAAGTTATTTCTGCAAATTCAGCCATCAAATCTAATCTGTAA 1284 0.4439 MAKEEVFEFLGNVPLLQRLPGSSVRKISELVIPKYYEPREYVVREGERGDGLYFIWEGEAEVVGSVSADDHREFQLKRYDYFGFGLSNEVHHADVIALTKLSCLVLPHEHSALLQPKSIWSAEKSVDTCSPVEHILHLEPIEVDIFRGITPPDAPKFGKVFGGQIVGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPIIYQVSRLRDGKSFATRKVDAIQKGNVIFTLLASFHKEELGFQHQEVHISSVPTPDKLLSLEELRELRLTDPRLPRTYRNKVAAVEFIPWPIEIRFCEPRASTNQTKSPPSLRYWFRARGKLSDDQALHRCVVAYTSDLIFLQVSLNPNRRKGMKARAVSLDHSMWFHRPVRADDWVLFVIFSPTSFNARGYVTGQMFNQKGELLVSVVQEGLMREVISANSAIKSNL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00917 427 Gene3D - 126 416 IPR042171 -
Viun5g00917 427 CDD Thioesterase_II_repeat2 144 236 - -
Viun5g00917 427 CDD CAP_ED 15 110 IPR000595 -
Viun5g00917 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 129 238 IPR029069 -
Viun5g00917 427 Pfam Thioesterase-like superfamily 158 413 - -
Viun5g00917 427 CDD Thioesterase_II_repeat1 311 413 - -
Viun5g00917 427 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 414 IPR029069 -
Viun5g00917 427 PANTHER ACYL-COA THIOESTERASE 117 414 IPR003703 GO:0006637|GO:0047617
Viun5g00917 427 SMART cnmp_10 15 130 IPR000595 -
Viun5g00917 427 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Viun5g00917 427 NCBIfam acyl-CoA thioesterase II 136 414 IPR003703 GO:0006637|GO:0047617
Viun5g00917 427 SUPERFAMILY cAMP-binding domain-like 4 110 IPR018490 -
Viun5g00917 427 ProSiteProfiles cAMP/cGMP binding motif profile. 15 83 IPR000595 -
Viun5g00917 427 Gene3D Jelly Rolls 1 122 IPR014710 -
Viun5g00917 427 FunFam Acyl-CoA thioesterase II 127 417 - -
Viun5g00917 427 Pfam Cyclic nucleotide-binding domain 34 109 IPR000595 -
Viun5g00917 427 FunFam Acyl-CoA thioesterase II 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00917 Viun-Chr5 5800047 5810097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00917 1 415 Acyl Lipid Metabolism Gene Families AT1G01710 68.193 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00917 K01068 - gmx:100805018 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00917 5 5800047 5810097 Viun5g00917 5 5800047 5810097 ECH
Viun5g00917 5 5800047 5810097 Viun10g01892 10 33684854 33692542 PCT