Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01892 ATGGAGACCGAGAGAGCGTTTGAGTTTCTAGGACGCGTTCCTCTTCTGCAGAGACTTCCGAGCTCGTCTGTGAGGAAGATATCTGAACTTGTGGATGTCAAAAGCTGCGAACCGGGAGAGTATGTTGTTCGTGAGGGTGAACATGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCTGAGGTTGTAGGATCCGTAAGTGCCAATGATGAAAATCGGCCCGAGTTCCAGTTGAAAAGATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCAGGCAGGTGTTGTTGCTTTGTCTAAGCTGACATGCTTAGTGCTTCCCCACGAGCACTCAACCCTGCTGCAGCCAAAATCTATCTGGAGAGCAGAAAATTGCGCTGAGACATGCTCACATGTGGAGAATATATTGCATGTGGAACCCATGGAGGTAGATATCTTCCGAGGAATTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCACTGGCCGCAGCATCAAAATCTGTTGACTGTCTAAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGAGATTTAGAAATGCCAATTACATATAAAGTTCATCGTATCCGCGATGGGAGGAGCTTTGCTACAAGGAAAGTAGAAGGAATTCAAAAGGGAACCGTCATATTCACGCTGTTGGCTTCATTTCAAAAGGAAGAACCGGGGATGGTCCACCAGAAAGTAGCTATACCATCTGTCCCATCTCCAGATAAGCTTCTACCAATGGAAGAGCTACGGGAGAGACGACTTACTGACCCTCGTTTACCAGTAATCTACCGGAACAAAGTGGCTATATCTCAATTCATCCCCTGGCCCATAGAGATACGATTATGTGAATATGAATTCTCAACAAATATGACAAAATCTCCCCCCAGTTTGAGATACTGGTTTAGAGCAAAGGGTAAACTTTCAGATGATCAAGCCTTGCATAGGTGCGTGGTAGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCACCGATCTGTAAAAGCAGATGATTGGGTGCTGTTTGCGATCTTTACTCCTACTGCCCACAGTGCACGCGTCTTTGTGACAGGCCAAATGTTCAATCAGGAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGAGTAGCCAGGAAAATTAATCAAGGAAATTCAGCCATTAAATCTAAGTTGTGA 1290 0.4496 METERAFEFLGRVPLLQRLPSSSVRKISELVDVKSCEPGEYVVREGEHGDGVYFILDGEAEVVGSVSANDENRPEFQLKRYDYFGYGLSNTVHQAGVVALSKLTCLVLPHEHSTLLQPKSIWRAENCAETCSHVENILHVEPMEVDIFRGITLPDAPRFGKVFGGQMIGQALAAASKSVDCLKVVHSLHAYFILAGDLEMPITYKVHRIRDGRSFATRKVEGIQKGTVIFTLLASFQKEEPGMVHQKVAIPSVPSPDKLLPMEELRERRLTDPRLPVIYRNKVAISQFIPWPIEIRLCEYEFSTNMTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPTAHSARVFVTGQMFNQEGELLVSLVQEGVARKINQGNSAIKSKL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01892 429 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Viun10g01892 429 CDD Thioesterase_II_repeat1 313 414 - -
Viun10g01892 429 CDD CAP_ED 15 112 IPR000595 -
Viun10g01892 429 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Viun10g01892 429 Gene3D - 129 418 IPR042171 -
Viun10g01892 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 131 242 IPR029069 -
Viun10g01892 429 Pfam Thioesterase-like superfamily 161 414 - -
Viun10g01892 429 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Viun10g01892 429 FunFam Acyl-CoA thioesterase II 1 124 - -
Viun10g01892 429 CDD Thioesterase_II_repeat2 146 238 - -
Viun10g01892 429 PANTHER ACYL-COA THIOESTERASE 113 417 IPR003703 GO:0006637|GO:0047617
Viun10g01892 429 FunFam Acyl-CoA thioesterase II 129 419 - -
Viun10g01892 429 SUPERFAMILY cAMP-binding domain-like 5 112 IPR018490 -
Viun10g01892 429 SMART cnmp_10 15 132 IPR000595 -
Viun10g01892 429 Gene3D Jelly Rolls 1 128 IPR014710 -
Viun10g01892 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 417 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01892 Viun-Chr10 33684854 33692542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01892 1 429 Acyl Lipid Metabolism Gene Families AT1G01710 62.937 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01892 K01068 - gmx:100803260 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01892 10 33684854 33692542 Viun10g01892 10 33684854 33692542 ECH
Viun5g00917 5 5800047 5810097 Viun10g01892 10 33684854 33692542 PCT