Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00904 ATGGATAAAGCATCAAACTTCGATGAAAATTCTGAGGTGGGTTATCACCCTTCACCTTCCAATACTACTGTTTTTTCCCCTATGAGTCGAGATTCGTTTGCATATTGTCAAACTTGGACAAGTTCAGAGTCTGAGATTGTAGATGACAGTAGTTATGCCAGTGAACCTTCACCTTCTCGGTGGAAGACTAAGAAAGATGTTCTTTCAATGAAGCTGCGAAAGCATTCAATTGATGATAAACTTGGTGACACTGATCTCTTAGATTCAGCCGAGCTTGAACTGATGAAGGAAAGATTCGCAAAGCTTTTGCTGGGAGAAGACATGTCTGGTAGTGGGAAAGGTGTTTGCACTGCAGTTACAATCTCAAACGCCATTACAAATCTCTATGCAACTGTATTCGGACAAAGTTTGAAGTTGGAACCATTAAAGCCAGAGAAGAAGGCTATGTGGAAAAGGGAAATGAAGGTTCTCTTATCAGTGTGTGAGTACATACAAGAATTTGCTCCAACTGCACAATATTTAGAAGATGGCACAATTGTTGAGATGATGAAAAGCAGGCCAAGGTCAGACATCTACATCAACCTCCCTGCACTGCAGAAGCTTGATGCAATGCTCATAGAAATATTAGACAGTTTCCAGGACAGTGAATTTTGGTATGCAGAGAACATACCAGGGAATTCAAATCGATCACGTGGGGCATCAAATCGAAGAACTGTTCCAAGGAAAGATGAGAAATGGTGGTTGCCAGTTCCTTGTGTTCTTCCTGGTGGCCTCTCTGACACGTCAAAAAAACATCTGATAGAGAAAAGGGATTGTGCTAATCAAATCCATAAAGCTGCCATGGCAATAAACAGCAATGTTCTTGCAGAAATAGATATCCCGGAAAATTATATAGATAATCTTCCCAAGAGTGGAAGATCAAGTCTAGGGGAATCGATTTACCACTACATGAACAGTGCAGAGAAATTCTCACCAGAACAACTTCTTGACTGTCTCAAAATAAGTTCTGAACGTGAAGCACTTGAGTTAGCAGACAGGGTTGAGTCATCAATGTACACGTGGAGACGCAAGGCTTGTCTGAGCCATTCAAAGTCATCATGGAGCAAAGTGAAGGATCTGATTGAAGAGACAGATTCTAAGGACAAAAACTACACCTTAGCTGAGAGAGCTGAGTCTCTGTTGCTTTGCCTGAAGCAAAGATATCCTGAACTTTCACAAACTTCTTTGGACACATGCAAGATCCAATACAATCGAGATGTAGGGAAAGCAGTACTAGAGAGTTATTCTAGAGTTTTGGAGAGCCTAGCATTCAACGTTGTTGCTTGGATTGAGGATGTTCTTTATGTAGATAAATCAATGAGGAATCGAGAGGTTTAG 1377 0.4103 MDKASNFDENSEVGYHPSPSNTTVFSPMSRDSFAYCQTWTSSESEIVDDSSYASEPSPSRWKTKKDVLSMKLRKHSIDDKLGDTDLLDSAELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQSLKLEPLKPEKKAMWKREMKVLLSVCEYIQEFAPTAQYLEDGTIVEMMKSRPRSDIYINLPALQKLDAMLIEILDSFQDSEFWYAENIPGNSNRSRGASNRRTVPRKDEKWWLPVPCVLPGGLSDTSKKHLIEKRDCANQIHKAAMAINSNVLAEIDIPENYIDNLPKSGRSSLGESIYHYMNSAEKFSPEQLLDCLKISSEREALELADRVESSMYTWRRKACLSHSKSSWSKVKDLIEETDSKDKNYTLAERAESLLLCLKQRYPELSQTSLDTCKIQYNRDVGKAVLESYSRVLESLAFNVVAWIEDVLYVDKSMRNREV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00904 458 ProSiteProfiles PRONE domain profile. 82 458 IPR005512 GO:0005085
Viun5g00904 458 MobiDBLite consensus disorder prediction 11 27 - -
Viun5g00904 458 FunFam Rop guanine nucleotide exchange factor 2 291 416 - -
Viun5g00904 458 MobiDBLite consensus disorder prediction 1 27 - -
Viun5g00904 458 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 34 457 IPR038937 GO:0005085
Viun5g00904 458 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 91 454 IPR005512 GO:0005085
Viun5g00904 458 Gene3D PRONE domain, subdomain 1 85 321 - -
Viun5g00904 458 Gene3D PRONE domain, subdomain 1 322 458 - -
Viun5g00904 458 FunFam Rop guanine nucleotide exchange factor 14 84 323 - -
Viun5g00904 458 FunFam Rop guanine nucleotide exchange factor 14 325 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00904 Viun-Chr5 5651291 5654418 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00904 - - gmx:100811579 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00904 5 5651291 5654418 Viun5g00904 5 5651291 5654418 ECH
Viun5g00904 5 5651291 5654418 Viun10g01901 10 33759904 33763281 PCT