Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01901 ATGGACAATTCATCCAACTTTGATGAAAACTCTGATGTGGGGTACCAACCTTCACATTCTTCTGTGGACCAAAATGACCACTCAATCACTGAAACTGTTGGATACTCCACATTCAGTGGCGAATCCTTTGCGTATTGCAGGACTAACTCTGAGGTTTCTAACTTCTCTGAGCCTATTGATGACAATAGCTTTGCAAGTGAACACTCACCTTCTCTATGGACACCTGTGAAACATGGAGCAAGCCAAGCTGTTCTTTCAAGGTTAGGAATGAAGCAGCAGCACCGGCACTCAATGGATGATAAATCTGAGGACCTTGATCTCTTGGAGTCAGAGCTTGATATGATGAGGGAAAGATTTTCAAAGCTTCTATTGGGGGAAGACATGTCTGGTGGTGGGAAAGGTGTTAGCACTGCAGTTACAATATCAAATTCAATCACCAACCTCTATGCAACTGTTTTTGGGCAAAATTTAAAGTTGGAGCCTCTTAAGCCTGAGAAGAAGGCCATGTGGAAAAGAGAAATGAATTGTCTCTTATCTGTGTGTGATTACATAGTAGAATTTGCCCCAACTGCACAATATTTAGAAGATGGTACAATTGTGGAGATGATGACAAGTAGACCAAGGTCAGATATTTATATCAACCTCCCAGCTCTTCAAAAGCTTGACACAATGCTTATAGAAATATTGGACAGTTTCCATGATACTGAATTTTGGTATGCAGACCAAGGGAGCTTATCAGGTAACTCAACACGGTCACGTGCAGGCTCATTTCGAAGGATTGTTCAGAGAAAAGATGAGAAATGGTGGCTTCCAGTTCCTTGTGTTCACCCTGGAGGCCTCTCTGATAAGTCTACAAAACACTTGAACGAGAAAAGAGACTGTGCTAATCAGATTCATAAAGCAGCTATGGCCATAAATAGCAGTGTTCTTGCAGAGATGGACATCCCAGAAACATATATGGCAAATCTTCCCAAGAGTGGAAGAACAAGTCTGGGGGACACAATTTACCGCTATATGTATTCTGCAGACAAGTTCTCACCAGATTATCTTCTTGATTGTCTCAAAATAAGTTCTGAACATGAAGCACTTGAGCTGGCAGACAAGGTTGAGTCTTCAATGTTCACTTGGAGGAGAAAAGCTTGTCTGAGCCATTCAAAAACATCATGGAACAAAGTTAAGGATCTCATGGCTGACACTGACCGAAGTGACAAAAACTACACCTTAGCTGAGAGAGCTGAAACCTTGTTGTTCTGCTTGAAGCAAAGATATCCTGAGCTCTCTCAAACATCCTTGGACACATGCAAGATTCAATATAACAGGGATGTAGGAAAAGCAATATTAGAGAGCTACTCAAGAGTGTTAGAAGGATTAGCATTCAACATTGTAGCATGGATTGAAGATGTTCTTCATGCAGATAAATCAACGAGGAACCAAAATGTATAG 1443 0.4123 MDNSSNFDENSDVGYQPSHSSVDQNDHSITETVGYSTFSGESFAYCRTNSEVSNFSEPIDDNSFASEHSPSLWTPVKHGASQAVLSRLGMKQQHRHSMDDKSEDLDLLESELDMMRERFSKLLLGEDMSGGGKGVSTAVTISNSITNLYATVFGQNLKLEPLKPEKKAMWKREMNCLLSVCDYIVEFAPTAQYLEDGTIVEMMTSRPRSDIYINLPALQKLDTMLIEILDSFHDTEFWYADQGSLSGNSTRSRAGSFRRIVQRKDEKWWLPVPCVHPGGLSDKSTKHLNEKRDCANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRTSLGDTIYRYMYSADKFSPDYLLDCLKISSEHEALELADKVESSMFTWRRKACLSHSKTSWNKVKDLMADTDRSDKNYTLAERAETLLFCLKQRYPELSQTSLDTCKIQYNRDVGKAILESYSRVLEGLAFNIVAWIEDVLHADKSTRNQNV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01901 480 ProSiteProfiles PRONE domain profile. 102 480 IPR005512 GO:0005085
Viun10g01901 480 MobiDBLite consensus disorder prediction 1 26 - -
Viun10g01901 480 FunFam Rop guanine nucleotide exchange factor 14 347 480 - -
Viun10g01901 480 Gene3D PRONE domain, subdomain 1 348 480 - -
Viun10g01901 480 Gene3D PRONE domain, subdomain 1 105 347 - -
Viun10g01901 480 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 46 478 IPR038937 GO:0005085
Viun10g01901 480 Coils Coil 91 118 - -
Viun10g01901 480 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 110 476 IPR005512 GO:0005085
Viun10g01901 480 FunFam Rop guanine nucleotide exchange factor 2 314 438 - -
Viun10g01901 480 FunFam Rop guanine nucleotide exchange factor 14 104 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01901 Viun-Chr10 33759904 33763281 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01901 - - gmx:100785956 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01901 10 33759904 33763281 Viun10g01901 10 33759904 33763281 ECH
Viun5g00904 5 5651291 5654418 Viun10g01901 10 33759904 33763281 PCT