Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00893 ATGGCTTCACTTGGAGCTTCACGTGCTCTGTGTTGTTCTGTGTTCATGATGTTTGTCACTTTCAGTTTTGCTGGGGACATAGTGCACCATGATAATATTGCTCCCAAGAGACCTGGCTGTGAGAACAACTTTGTCCTGGTTAAAGTTCCAACTTGGATCGATGGTGTGGAAAGCTGTGAGTATGTTGGCGTTGGTGCAAGGTTTGGCCCTACACTGGAATCAAAAGAAAAACGTGCTAACCATACTAGAATTGCAATTGCTGACCCTCCTGATTGTTGTAGCCTACCTAAGAATAAGCTCACTGGCGAGATCATTTTGGTGCACCGAGGACAGTGTAGTTTCACAACCAAGGCAAATATAGCTGAACAGGCTGGTGCTTCAGCCATGCTGATTATAAATTACCGTACAGAACTTTTCAAGATGGTTTGCGAAGCAAATGAAACTGATGTGGATATTGGAATACCTACTGTCATGCTTCCACAAGATGCTGGGGAAAACTTGGAAAATCACTTACTAAACAACTCAGTGGTGTCTGTGCAGTTGTACTCTCCATATCGTCCAATGGTTGATGTTGCAGAAGTGTTTTTGTGGCTTATGGCTGTTGGTAGTATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCGAGAGAGTCTGCCATTGAGCAGGAGAAGCTACTAAAGGATGCTTCAGATGAATATATAAGTACAGAGAGTGCTGGTTATAGTGCTTATGTGGAAATCAGTACTGCAGCAGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTCATGGCATCATGGTTTGTTGAAGTTCTGGTGGTTCTGTTTTGCATTGGTGGGGTTGAGGGACTACAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAGATGGTTCCAACATGCTGCACAAACATTTGTGAAAGTACCCTTCTTTGGTGCTGTGTCATATCTGACAGTTGCTGTTACTCCCTTCTGCATAGTGTTTGCTGTGCTTTGGGGTGTTTATCGCCATGAACCATTTGCTTGGATTGGTCAAGATATTCTTGGTATCACATTGATTATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGGTTGGAACTGTTCTTCTCAGTTGCGCCTTCCTGTATGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTCATGATAGTGGTAGCTCGAGGTGATAAGAGTGGAGAAGATGGTATCCCCATGCTGCTCAAGATACCACGTTTGTTTGATCCTTGGGGTGGCTACAGCATCATTGGTTTTGGGGATATCATCTTACCAGGGCTTCTAGTTGCATTTTCTCTAAGGTATGATTGGTTAGCAAAGAAGAACCTTCGAGATGGATACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTTATCACATACATGGCTCTGAACTTGATGGATGGACATGGTCAACCTGCTTTGCTTTATATAGTCCCGTTTACACTTGGAACCTTTTTGTCCTTAGGAAAGAAGAGAGGTGAACTCAAGGTTTTATGGACAAGGGGGGAACCAAAAATACCTTGCCCTCACATCCAAGAGGATCAATCAACAAACCAGTAA 1620 0.4315 MASLGASRALCCSVFMMFVTFSFAGDIVHHDNIAPKRPGCENNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKRANHTRIAIADPPDCCSLPKNKLTGEIILVHRGQCSFTTKANIAEQAGASAMLIINYRTELFKMVCEANETDVDIGIPTVMLPQDAGENLENHLLNNSVVSVQLYSPYRPMVDVAEVFLWLMAVGSILCASYWSAWTARESAIEQEKLLKDASDEYISTESAGYSAYVEISTAAAISFVVIASCFLVMLYKFMASWFVEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAAQTFVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRHEPFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEDGIPMLLKIPRLFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYMALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKVLWTRGEPKIPCPHIQEDQSTNQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00893 539 PANTHER SIGNAL PEPTIDE PEPTIDASE 69 531 IPR007369 GO:0004190|GO:0016020
Viun5g00893 539 SMART psh_8 243 512 IPR006639 GO:0004190|GO:0016020
Viun5g00893 539 SUPERFAMILY PA domain 90 139 IPR046450 -
Viun5g00893 539 Pfam PA domain 90 167 IPR003137 -
Viun5g00893 539 Gene3D - 40 184 - -
Viun5g00893 539 Pfam Signal peptide peptidase 244 523 IPR007369 GO:0004190|GO:0016020
Viun5g00893 539 FunFam Signal peptide peptidase-like 3 46 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00893 Viun-Chr5 5593278 5600084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00893 K09597 - gmx:100808921 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00893 5 5593278 5600084 Viun5g00893 5 5593278 5600084 ECH
Viun5g00893 5 5593278 5600084 Viun10g01917 10 33869660 33878616 PCT