Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00892 ATGTCAGAAATTGACATGACGGTTATTAAACCAGAGAAAAAATTTCAGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAGCAAGTGGAACAAGAAATTGCAATGTATTGCCCTTTGATTTGTAAAGAAATAATACAAAAAGGGATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCAACATTGAGCTTAATACTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAAAGGAAGTCTTATGATGAAAAGTTTGTTAGGATGGACACAAAGCGGCTGTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCCCGGATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAAATATTTCATCTGCCTGATGATCTAACTGAGGAAGAGAAGTTGGAGCCCTTGAAGAACACAACTGATGACCCAAGGATCAGGCTTTTGAACAGATTGTATGCGAAGAAGAGGAAAGAACTAAAAGAGCGTGAGAGGTTGAAGAGTGTTGAAGTTGAAGAAGAGCATATAGATAAACGTTCCGTTGATGATCTCTTGTCTTTTATTAATGGAAATGATGAAGATCCAAAGGGCATTAAAACTTCTAAGAATAAAAAGAAAAATAGAAGGAAAAAAGAGCAACATCAGAAGAACTCTTGTCTGAAGGAAGCTTCTGGAGTGAATAAGAAGGAAGTAAATGGTCAAAACATCAGACATACAAATTCTGAAGCTGATATAATTGCCGAGACTTCAATTTCACATACAGAAGATGTTTTCGCTCATAAGGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCACTTAAGGAAAAAATTGACAGGGAAGTGGAAGATTTCGCCCGACGATTGAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCATCTGGACAAGAAAGGAAGACGATGCTTTTTAGTCCCAATGGAAATAGTTTTCTACGGCGAAATGCTTGA 1056 0.3883 MSEIDMTVIKPEKKFQMMKPYIWLETSDGSIQQVEQEIAMYCPLICKEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERERLKSVEVEEEHIDKRSVDDLLSFINGNDEDPKGIKTSKNKKKNRRKKEQHQKNSCLKEASGVNKKEVNGQNIRHTNSEADIIAETSISHTEDVFAHKEFDDGDIDDGIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFSPNGNSFLRRNA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00892 351 PANTHER SKP1 18 159 IPR016897 GO:0006511
Viun5g00892 351 FunFam SKP1-like protein 21 isoform X1 16 166 - -
Viun5g00892 351 Pfam Skp1 family, dimerisation domain 121 158 IPR016072 GO:0006511
Viun5g00892 351 MobiDBLite consensus disorder prediction 329 351 - -
Viun5g00892 351 Pfam Skp1 family, tetramerisation domain 21 84 IPR016073 GO:0006511
Viun5g00892 351 MobiDBLite consensus disorder prediction 211 248 - -
Viun5g00892 351 SUPERFAMILY Skp1 dimerisation domain-like 94 164 IPR036296 GO:0006511
Viun5g00892 351 Gene3D Potassium Channel Kv1.1; Chain A 15 166 IPR011333 -
Viun5g00892 351 SMART skp1_3 19 120 IPR001232 GO:0006511
Viun5g00892 351 MobiDBLite consensus disorder prediction 330 351 - -
Viun5g00892 351 SUPERFAMILY POZ domain 20 84 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00892 Viun-Chr5 5585471 5593057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00892 - - gmx:100809439 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00892 5 5585471 5593057 Viun5g00892 5 5585471 5593057 ECH
Viun10g01919 10 33884771 33891664 Viun5g00892 5 5585471 5593057 ECH
Viun5g00892 5 5585471 5593057 Viun10g01919 10 33884771 33891664 PCT